Ruminococcus albus: Rumal_1640
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Entry
Rumal_1640 CDS
T01387
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ral
Ruminococcus albus
Pathway
ral03420
Nucleotide excision repair
ral03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rumal_1640
03430 Mismatch repair
Rumal_1640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ral03400
]
Rumal_1640
Enzymes [BR:
ral01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rumal_1640
DNA repair and recombination proteins [BR:
ral03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rumal_1640
MMR (mismatch excision repair)
Other MMR factors
Rumal_1640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
ADU22140
UniProt:
E6UI79
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All DBs
Position
complement(1891935..1894277)
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AA seq
780 aa
AA seq
DB search
MKDIDMIKKQALERFFSRMNPMQQKAVFRVNGPLLILAGAGSGKTTVLVNRIANMIHFGD
AYNTTGQIFTDEEAAFIKDYAEGRTDDGKRLAAVIGVRQVRPWNILAITFTNKAAGELKE
RIEKILGDEGRGIVAATFHSACVRILRRECGNIGFTPSFAIYDTDDSKRVIKAAMRSLDI
DEKMFPVKTVMSEISHAKDSMITPEEFAKEASGDYYRMNVAKIYKKYQKELLANNAMDFD
DIICHTVTLFENCPDVLDHYQNLYKYIMVDEYQDTNRVQFRLVSLLSQKFGNICVVGDDD
QSIYRFRGATIENILNFEDEFGCRPEDVIKLEQNYRSTQNILTCANKLISNNVGRKGKNL
WTDCGDGDKVIVHKSMNERDEASYIAKTVSENNDNGRRFGDHAVLYRMNAQSNALEQAMI
KAGIPYKIFGGLKFYDRKEIKDILAYLEVINNHADMFRLQRIVNEPKRGIGDATVRTIGQ
VSSDLGEDPIYVMAHSTEYVPLAKKSKALTEFAFMIEDLTDLSEEASLPELLDEVVEKTG
YGAMMKQQGVEGEMRLENIAELKSTMTKYEEEAEDPSLEGFLEEVALYTDIDTLDENSDY
VALMTMHAAKGLEFPVVFVAGMEDNVFPSSRSRDSEAELEEERRLAYVAMTRAKEQLHLI
YAGERMLYGNTQYNRESQFIKELPPENIEKQVPKLDTAASSRRSGDISLGRQMAMFNSAK
AAPTEPAESYSVGERVMHKKFGEGTIIGVTPMAGDTMLEIAFEKVGTKKIFANFAKPKKI
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatatcgatatgataaaaaaacaggctcttgaaagatttttcagccgtatgaac
cccatgcagcagaaggcagtgttccgcgtaaacggacctctgcttatacttgcaggcgcc
ggcagcggtaagactactgtactggttaacaggatagcaaatatgatccatttcggtgat
gcttataacacaacagggcagatcttcaccgacgaagaagccgcatttatcaaggattat
gctgagggcagaacagatgacggcaaacggcttgccgctgtcatcggtgttagacaagta
cgtccgtggaacatactggcaataacctttaccaacaaagctgccggcgaactcaaagaa
cgtatcgaaaaaatactcggagatgaaggcaggggcattgttgctgcgactttccactca
gcctgcgtacgtatattaaggcgcgagtgcggtaatataggttttacccccagctttgcc
atatatgataccgacgattcaaagcgtgtcatcaaagctgccatgcgttcacttgacata
gatgaaaagatgttccctgtaaaaactgtaatgagtgagatatcccatgcaaaggattca
atgataactcccgaggaatttgcaaaggaagcttcaggcgactattacaggatgaatgta
gcaaagatatacaaaaaataccagaaagaactgctggcaaacaatgctatggactttgat
gacatcatctgccataccgttaccctgtttgaaaactgccccgatgtacttgatcactat
cagaacctttataagtatattatggtagatgaatatcaggatacaaacagagtacagttc
aggctggtttccctgctatcgcaaaaattcggaaatatatgtgtcgtgggtgatgatgac
cagagcatataccgtttccgcggtgctactatagagaacatcctgaactttgaagatgaa
ttcggatgccgccccgaggacgttataaaactggaacagaactaccgctcgacccagaac
atactgacctgtgcaaacaagctcatcagcaacaacgttggaagaaagggcaagaatctg
tggacagactgcggcgacggtgacaaagtcatagtacataagtcaatgaacgagcgtgat
gaggcttcctatattgcaaagacagtaagtgaaaacaacgataacggcagacgtttcggt
gaccacgctgtactttaccgtatgaacgcccagtccaacgctcttgaacaagctatgata
aaagcaggtatcccctacaagatcttcggcggactgaaattctatgaccgcaaagagatc
aaggatatcctggcatatcttgaggtaattaacaatcacgcggatatgttcagactacag
aggatagtcaacgaaccgaaacgcggtataggagatgcaacagtgcgtaccataggtcag
gtttcatccgatctcggagaggatccgatatatgttatggcacattccactgaatatgtg
cctcttgcaaaaaaatcaaaggcactgactgaatttgcgttcatgatcgaagacctcaca
gatctttccgaagaagccagcctgcccgaactgcttgatgaggtagttgaaaaaacaggc
tatggcgctatgatgaagcagcaaggtgtcgagggcgagatgcgccttgaaaatattgcg
gaactgaaatctacaatgacaaagtacgaggaagaagcagaagatccctctcttgaaggt
tttcttgaagaagttgctctatatactgatatagacaccctcgacgaaaacagcgattac
gttgcactgatgactatgcacgctgcaaagggtcttgaatttccggtagttttcgtggca
ggtatggaggataatgtattcccgtcaagccgcagcagagacagtgaagccgaactcgaa
gaagaacggcgtcttgcttatgttgcaatgacccgtgccaaggaacagcttcaccttatt
tatgcaggtgagcgtatgctgtacggcaacacccagtataaccgtgaatcacagtttata
aaggaacttccacccgagaatattgaaaagcaagtaccaaagcttgacaccgctgcaagt
tcaagacgttcaggtgatatatctctgggcagacagatggcaatgtttaattcagcaaag
gctgccccgactgaacctgctgagtcctacagtgtaggcgaaagagtcatgcacaaaaag
ttcggtgagggtacgataataggtgtaacacctatggcaggtgacactatgctggaaata
gcctttgaaaaagtcggcactaaaaagatatttgctaattttgcaaaaccaaaaaagata
taa
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