Ruminococcus albus: Rumal_1643
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Entry
Rumal_1643 CDS
T01387
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ral
Ruminococcus albus
Pathway
ral03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rumal_1643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ral03019
]
Rumal_1643
Messenger RNA biogenesis [BR:
ral03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rumal_1643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
ADU22143
UniProt:
E6UI82
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Position
1896345..1898189
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AA seq
614 aa
AA seq
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MNNNNSNNGKRKASKRYVQGKGKLRGVPLDRKNGNKQEADSSRTKLRPNNRQQRSNKEAQ
RRTPVKIIPLGGLNEIGKNFTVIECSNDMFVIDCGLAFPDSEMLGVDIVIPDFTYVEKNL
EKMRGVVITHGHEDHIGGLPYFLKKFPGVPVYGTRLTVGLIEGKLREHGLLDSVKLNTVT
PRQTIRMGCMAVEFIRVNHSIPDSVGMAIHTPAGVLIHTGDFKVDYTPIEGGIIDLPRFA
ELGNKGVLALMADSTNSERPGYTASERKVGDNLEMLFSKAEGKRIIIATFASNIHRVQQI
INNAVNTGRKVAVSGRSMVNVISVGIELGYLKVPDGVLIDIDMIGRYLPDQIVLVTTGSQ
GEPMSALSRMSMNEHRKVSITPQDFIIISANPIPGNEKLVTRVVNDLMKLGAEVVYEKMY
EVHVSGHACQEEQKLMLSITKPKFFIPVHGEFKHLMKHKQTAMSVGIPEENIIIAGIGDV
IETDGVDMKITGEVPAGKVLVDGLGVGDVGAIVLRDRKHLAEDGLIIAVATIDRSVGEIL
AGPDLVSRGFVYVRESEELMNEAKELLTETLQSCLDSNMHEWNAIKGKMKDNLSDFIFGK
TKRSPMILPIIMEI
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgaataataacaattctaacaacggtaaaagaaaggcatcaaaacgatacgtacaggga
aaaggcaaactcagaggtgttcctcttgacagaaagaacggaaacaagcaggaggcagac
agttccaggacgaagcttcgtccgaataacaggcagcagcgcagcaataaagaagctcag
cgccgtacccctgtaaaaatcatacctcttggaggacttaacgaaataggcaagaacttc
acggttatcgaatgctcaaacgatatgttcgttatcgactgtggtctggctttccctgac
agtgagatgctgggtgttgatatcgttatacctgatttcacctatgttgagaagaatctt
gaaaagatgcgtggtgtggtaataactcacggtcacgaggatcatataggcggacttccg
tactttctgaagaaattccccggtgttcctgtttacggtacaagacttactgtcggactt
attgagggcaaacttcgtgagcatggcttgctggatagtgtaaagcttaataccgtgaca
cctcgtcagaccataaggatgggctgtatggcggtggaattcatcagggtcaaccattct
atacccgattctgtgggcatggctatacacacaccggcaggtgttcttatccatacaggt
gacttcaaggtagactatactccgatagaaggcggtataatcgatctgcccagatttgca
gagcttggcaataagggcgtacttgctcttatggcagactctacaaactccgaacgcccg
gggtataccgccagtgaacgcaaggtgggtgacaacctggagatgctgttttcaaaggct
gagggcaagcgaataatcatagcgacatttgcttcaaacatccacagggtacagcagata
atcaataatgctgtcaatacaggacgtaaggtcgctgtatctggcaggagcatggtgaac
gttataagtgtcggcatagaactgggatatcttaaagtacctgacggtgtacttattgat
attgatatgataggaagatatctcccggatcagatagttcttgtgacaacaggcagccag
ggtgagcctatgtctgccctttcgcgaatgtccatgaacgaacaccgcaaggtcagcata
actccacaggatttcataataatctcagctaaccccatacccggcaacgaaaaactggta
acaagggtagtcaatgatcttatgaagctgggcgctgaagtcgtatacgaaaagatgtac
gaggtacacgtttcgggtcatgcttgtcaggaagaacagaagctgatgctttccataacc
aagcccaagttctttataccagttcatggtgaattcaagcatctgatgaagcataagcag
accgccatgagcgtgggtatacccgaggaaaatataataattgccggaataggtgatgtt
atagaaactgacggtgtggatatgaagattacgggtgaagttcctgcaggcaaggtcctt
gttgatggtcttggcgtcggtgatgtaggcgctatagtactgagagacagaaagcatctt
gctgaggacggacttataatcgcagttgctacaatagacaggtcagtaggcgagatactt
gcgggtcccgatcttgtatcaaggggatttgtgtatgtgcgtgagagcgaggagcttatg
aatgaagcaaaggaactgctcacagaaacgctccagagctgtcttgacagcaatatgcat
gagtggaacgctatcaagggcaagatgaaagataatctttccgattttattttcggcaaa
acaaagagaagtccgatgatattgcccataattatggaaatataa
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