Ruminococcus albus: Rumal_2169
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Entry
Rumal_2169 CDS
T01387
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ral
Ruminococcus albus
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ral03016
]
Rumal_2169
Enzymes [BR:
ral01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Rumal_2169
Transfer RNA biogenesis [BR:
ral03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Rumal_2169
Prokaryotic type
tRNA splicing ligases
Rumal_2169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADU22655
UniProt:
E6UC33
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All DBs
Position
2430569..2431804
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AA seq
411 aa
AA seq
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MFVHVTKNKDMLPIKIWQSGIEAIEEKCIAQAEHLAKLPFAEKWIALLPDTHAGKGMPIG
GVIACENVVIPNAVGVDIGCGMAYVQTDIPVSLLRETMTGSGDLVKTICGDILRNIPTGY
NHYKTPQNSDVLDRAKAEMSKYEADKELIPQIDDGYFQAGTLGGGNHFIEIQQDDEGMCG
IMLHSGSRHFGNIVGQYFNKIAHELNDRWFSCVPSEWNLPFLPADTDEGKRYLAWMQLCM
DFAYENRAIMLGKVKEIFTKHIEKHTGITPIFSDEINCHHNYAALESHFGKNVWVHRKGA
IRAREGEMGIIPGAMGSYSYIVRGKGCEESFMSSSHGAGRAYSRTAAMEKFSVESVMVDL
KKQNVVLAKNKKSDVPEESRFAYKDIDDVMTNQQELTEPVKRLFTVGVIKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgttcatgttactaaaaacaaagatatgctccccataaaaatatggcaaagtggt
atcgaggcgatcgaagaaaaatgcattgcccaggctgaacatctggctaaattgcctttc
gcagaaaagtggatagctctgttgcctgatacccatgcgggaaaaggtatgccgataggc
ggtgtcatcgcctgcgagaatgttgtgatacccaatgcggtcggtgttgatataggctgc
ggaatggcttacgtacagacagatatacccgtatctctcctgcgcgagaccatgacaggc
agcggtgatctagtaaagaccatatgcggagatatcctcagaaatatccccacgggatat
aaccattacaagacccctcagaattctgacgtgcttgaccgagcaaaggctgaaatgagt
aaatatgaagccgataaagagctcataccgcagatagatgatggttattttcaggcaggc
accctcggcggagggaaccatttcatagagattcagcaggacgatgagggtatgtgcggc
ataatgctccattctggcagccgccatttcggaaatatcgtcggtcagtatttcaataaa
atagctcacgaactcaatgacagatggttctcttgtgtgccctccgagtggaatcttccg
ttcctgcctgccgacacagatgagggaaaaagataccttgcgtggatgcagctttgcatg
gatttcgcatatgagaaccgtgcaataatgctcggcaaggtcaaggagatttttaccaaa
catatcgaaaagcacacaggtataactcccattttctctgatgagataaactgccaccac
aactacgcggcgcttgaaagccatttcggaaagaacgtatgggtacaccgcaagggtgct
atacgtgcacgcgaaggagaaatgggcataattcccggagcaatgggttcatacagctat
atagtccgcggaaagggttgtgaagaaagctttatgtcatcatcacacggtgcgggaaga
gcatattcacgtactgcggctatggaaaaattctcggtcgaatcggtcatggttgacctc
aaaaaacagaacgtagtgcttgcgaaaaacaagaagtctgatgtccctgaagagtcacga
tttgcatacaaggatatcgatgatgtcatgacaaatcagcaggaactcaccgaacctgtt
aagcggctgttcacggtaggtgttataaaaggataa
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