Ruminococcus albus: Rumal_3130
Help
Entry
Rumal_3130 CDS
T01387
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ral
Ruminococcus albus
Pathway
ral03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rumal_3130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ral03400
]
Rumal_3130
Enzymes [BR:
ral01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rumal_3130
DNA repair and recombination proteins [BR:
ral03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rumal_3130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SET7_N
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ADU23595
UniProt:
E6UF68
LinkDB
All DBs
Position
3513305..3516775
Genome browser
AA seq
1156 aa
AA seq
DB search
MNIFLETASRLEHYKDIKNCLLKGYTPAAVTGVSGIHKAMLTAALSSLGKCLLICADEAD
ATKMVSDMNEMAGEQIACVYPAKDMNFAYMEGISREYEHRRIAALSDIASGNCRIMAASM
EACLQGTIPPAALRENTFIIENGSTIDTEALSARLLAAGYTKTDQVEGAAQFAVRGSIVD
IFPVQDKQPVRIELWGDEVDTMAYFDVESQRRSEPLDKVTVAPALEIIFPDSAEQVRRME
ELAKSARGKLTDKIREHIQKDIDLIESGIMLTDLDKYYSLAYSETATVFDYFGGGFCAVS
EYNNCIEKGKAALAQLAEDLKILYTEGILFKRLEGFNLDIGQAESRIVNMKTIFMDTFMR
SLNSVKLKKLINTDCRQTSAWGGSMVALQEELQTLCDNGYCTVVLAGSEKTVPIIVKDLN
DSGINAEQMSESFEIKPGKVYVRTGSLSAGYDYPSIGCALITQMKALSSKRKKPKHKAGE
EIKALSDIHSGDLVVHSMYGIGKFMGIKNIETSGVKKDYITISYAGTDVLYVPVTQLDLV
SRYVGPGEDGNIRLNKLNSTEWTRTRNKVRAAVKDMAEELTKLYAQRQMAKGYSFEPDDD
WQRDFEERFDYQETDDQLRAINEIKGDMEKQTPMDRLLCGDVGFGKTEVALRAAFKCVVN
GKQCAILAPTTVLAWQHYQTAIKRFEHFAVKVELLSRFRKPKEQSAIVRELKRGTIDLII
GTHRLVSKDVEFKDLGLAIIDEEQRFGVAHKEKFKENHPGVDILTLSATPIPRTLNMALS
GIRDMSVIEEPPMDRHPIQTYVIEHNDGVILQAITKELRRGGQVYYIHNRIDTILRTVDR
LQNSIPDARIGYAHGQMDEKELSEIWRQVVEHEIDILVCTTLIETGIDVPNVNTLIIEDA
DRLGLSQLHQLRGRVGRSNRRAFAYFTFKRGKVLNEIASKRLQAIREFTQFGSGFHIAMR
DLEIRGAGSILSAKQHGHMEAVGYDMYLRLLNEALAEQRGEEIPHSPEDCLVDIAINAYI
PDGYIENAAQRVDAYRKIASIATEEDSRDVLDELIDRYGDPPKSVLGLVQIALLRNRASR
LGIKEIKQMGVKMQFYITTLEPRQIAALADKYKSKVRFVDELKPYFAVTLGKQQKSAELM
QEVIEVLYGAVHKTKS
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatttttagaaacagcaagccgtcttgaacattacaaggatatcaagaactgc
ctgctgaaaggttatactcccgcggcagtaacgggcgtttcggggatacacaaggctatg
ctgacagcggcgctttcctcgcttggaaaatgcctgcttatatgtgcagacgaagctgat
gctactaaaatggtatcggatatgaacgagatggcaggcgaacagatagcctgcgtttat
cctgctaaggatatgaacttcgcatatatggagggcatatcccgtgaatacgaacacagg
cgtatagctgcgctttcggatatagcatcgggcaattgcaggataatggcggcaagcatg
gaagcttgtctgcaaggaacgataccgccggctgccctgagagagaacaccttcattatc
gagaacggcagcacgatcgacaccgaggcgctttccgccagactgctggctgcaggatat
accaagaccgaccaggtagaaggcgcagcacagttcgctgtgagaggttctatagtagat
atcttccccgtacaggacaaacagcctgtgcgtatcgagctttggggcgatgaggttgac
actatggcatatttcgatgttgaatctcaaagacgttccgagccgctggataaagtgact
gtcgcacctgcactggagataatcttccccgacagcgccgaacaggtaagacgtatggaa
gaactggcaaagtctgcccgaggaaagctgacagacaagataagagagcatatccaaaag
gatatagacctcatcgagagcggcataatgcttacagaccttgataaatactactccctt
gcctacagcgaaacagcaacggtatttgactatttcggcggaggattctgtgctgtatct
gaatacaacaactgtattgaaaagggcaaggcggcgcttgcacagctggcagaggactta
aagatactctataccgagggtatactcttcaagcggctggagggcttcaaccttgatata
ggtcaggcagagagcaggatagtaaatatgaagactatcttcatggataccttcatgcgc
tcgctgaacagtgtgaagctcaaaaagctgataaacaccgactgccgccagacctctgca
tggggcggaagcatggtggctttgcaggaggaactgcagaccctatgcgacaacggctac
tgtacggtagtgctggcaggatctgaaaagacagtacctatcatcgtaaaggatctgaac
gattccggtataaacgcggaacagatgagcgaaagcttcgagataaagccgggaaaagtc
tatgttcgtacaggcagtctttcggcgggatatgattatccttccataggctgtgctctg
ataacccagatgaaagccctgtcatcgaagcgcaaaaagcccaagcacaaagcaggcgag
gagataaaggcgctctccgatattcattcgggagatcttgttgtgcattcaatgtacggc
ataggaaagttcatgggcataaagaacatcgaaacaagcggcgtgaaaaaggactatatc
accataagctatgcaggtacggatgtactttatgtgccagttactcagcttgaccttgta
tcaaggtatgtggggcccggcgaggacggcaatatcaggctgaacaagcttaattccacc
gaatggacgcgcacaaggaacaaggttcgtgccgcagtaaaggatatggctgaggaactg
accaagctgtacgcacagcgccagatggcaaagggatattcctttgaaccggatgacgac
tggcagagggattttgaggaaagatttgactatcaggagaccgatgaccagctgagggcg
ataaacgagataaaaggcgatatggaaaagcagacccccatggacagacttctctgcggc
gatgttggcttcggcaaaacggaagtggcactgagggcggctttcaagtgcgttgttaac
ggaaagcagtgcgcgatactggcacctaccaccgtacttgcatggcagcactatcagacg
gcgataaagcgctttgagcatttcgctgttaaagtggaactgctgtcaagattccgcaaa
cccaaggagcaatcagctatcgtccgcgaactcaaaagaggtactatcgacctcataata
ggcactcacagactggtatcaaaggatgttgaattcaaggacttaggtcttgccataata
gacgaggaacagcgtttcggcgtggcgcacaaggaaaaattcaaggagaaccacccaggt
gtggatatactgaccctttccgccacacctatcccccgtacccttaatatggcactcagc
ggcataagggatatgtccgttatcgaagaaccacctatggacagacatcctatacagacc
tacgtcatagaacacaacgacggtgtgatacttcaggctataaccaaggagttaaggcgc
ggcggtcaggtatactatatacacaacaggatagataccatactgagaactgttgaccgt
ctgcaaaacagtatcccggatgcacgtataggctacgcacacggacagatggacgaaaaa
gaactatccgagatatggcggcaggtagtcgaacacgagatagatatactggtatgcacc
acccttatcgaaacgggtatagatgtaccaaacgtaaatacactgataatcgaggacgca
gacagactgggactttcacagctgcaccagctgagaggccgtgtaggacgttcaaacagg
cgagcttttgcctacttcacattcaagcgcggaaaggtactcaacgagatcgcaagcaaa
agactgcaggctataagggagttcacacagttcggctccggcttccatatagctatgaga
gatctggagatacgcggtgcaggaagtatactctcggcaaaacagcacggtcacatggag
gctgtgggatatgatatgtacctcagacttctcaatgaagccttagctgaacagaggggc
gaggagataccacattcgcctgaggactgccttgttgatattgctataaatgcgtatatc
cccgacggctacattgaaaacgcggcacagagggtagatgcttaccgaaagatagcgtca
atagctactgaggaggattcccgcgatgttcttgacgaactgatagaccgttacggtgac
ccgcccaagtctgtgcttggtctggtacagatagcgctgctgagaaacagggcttcaagg
ctcggcataaaggagatcaagcagatgggcgtgaagatgcagttctacatcaccaccctt
gaacccagacagatagcggcacttgcagacaaatacaaaagcaaggtacgttttgttgac
gagctgaagccttacttcgcagtgaccctcggcaagcagcagaaatctgctgaactgatg
caggaagttatcgaagtgctttacggtgcagtacacaaaacaaagtcctga
DBGET
integrated database retrieval system
