Ruminococcus albus: Rumal_3327
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Entry
Rumal_3327 CDS
T01387
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ral
Ruminococcus albus
Pathway
ral03410
Base excision repair
ral03430
Mismatch repair
ral03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ral00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rumal_3327
03430 Mismatch repair
Rumal_3327
03440 Homologous recombination
Rumal_3327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ral03400
]
Rumal_3327
DNA repair and recombination proteins [BR:
ral03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Rumal_3327
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Rumal_3327
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rumal_3327
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Toxin-deaminase
Motif
Other DBs
NCBI-ProteinID:
ADU23789
UniProt:
E6UJE3
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All DBs
Position
pRUMAL01:55915..57576
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AA seq
553 aa
AA seq
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MIWSKRDELDSIKQVVSRNSGMTEEELMKTEWDTQIMHLYDVADYLRNASDTKKKIAVFA
DYDCDGICSAVIMHVILKSLQIDFKIYFPKRGIGYGLQKRYIDMIDEKYDAVITIDNGIS
AFEGIDAAKARGMDVIVIDHHLQSPEGLPNADIIVDPHVFKEKENFEDWCGAGLGYELSK
LICDEKRQKVCLQFAAFATVADVVPLRFNNRTIVKNGLELINNSSVNSIHLLINEITGLG
KPNVDETTIGFKIGPIINAMGRVEDDAEYVYRYFTSGNPEMLQHMVDNNEVRKELVIQAV
ERAQNIVVEECLFSDVPKIIYDPKTIEGIVGVVAGRLTETYKSPVICLTDSETPGVIKGS
ARSTEDINIKEALDKVSDHLLHYGGHAGAAGLSLKIDELDNIRDCFFSIFEDFEVQEKDE
IFYDLEINAEEIPDTLSLLKAYAPFGEGNRPPVFKINNFKCLPRNGKLFQILGDDGKALK
LFGNGCIAIGFDAVEKFNSLNMPKTLDIIGVISENNYGKPEAQIEISDFKKVTEIKNQSE
LTKLCINDILSGL
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgatttggtcaaaaagagacgaattagattccataaaacaagttgtgtctcgaaattca
ggtatgactgaagaagagctcatgaaaactgaatgggatacacagataatgcatttgtat
gatgttgcagattatctcagaaatgcctcagatactaagaagaaaatagcggtatttgct
gactatgactgcgatggtatatgttctgcagtgatcatgcatgtgatcttaaaaagcctt
caaatagattttaagatctatttcccgaaaagaggaattggatacggcttacaaaaaaga
tacatagatatgatcgatgaaaaatatgatgcagtgataactattgataacggaatctcc
gcttttgagggcatcgatgctgcgaaagcaagaggaatggatgttatagttatagaccac
catctgcaatcaccggaaggtctgccaaacgctgatataatagttgatccacacgtattc
aaagaaaaagaaaattttgaagattggtgcggagccggacttggctacgaactttctaaa
ctcatctgtgatgaaaaaagacagaaagtatgcctgcagttcgcagcattcgctacagta
gcagacgttgttcctttacgtttcaataatcgcacaattgtaaaaaatggattggaactg
ataaacaatagttccgttaattccatacatcttcttataaacgaaattaccgggttagga
aagccgaatgtcgatgaaacaactataggctttaagatcggacctattatcaacgccatg
gggcgtgttgaggatgatgctgaatacgtataccggtactttactagcggaaatcctgaa
atgcttcagcatatggttgataataatgaagtaagaaaggaacttgttattcaagcagtc
gaaagagctcagaatatagtagtagaagagtgcttattttcagatgttccaaaaattata
tatgatccaaaaacgatcgaaggaattgtcggtgttgttgccggcagattaacggaaact
tacaaaagtcctgtaatttgcctgacggacagtgaaacgccgggagtaattaaaggatcc
gcacgatctactgaggatattaatataaaagaagcactggataaagtatctgaccattta
cttcattacggtggacacgcgggagctgccggcttatcacttaaaattgatgagcttgat
aacatccgcgattgttttttcagtatattcgaagatttcgaagttcaagaaaaagatgaa
atattctatgatcttgaaatcaatgcagaggaaattcctgatacgttgtcactactaaaa
gcgtatgcgccttttggagaagggaacagaccgcctgtattcaagatcaataactttaaa
tgtttacccagaaacggaaaactattccagatattaggcgatgacggcaaagcactgaag
ctattcggtaacggttgcatagcgatcggatttgatgccgtagaaaagttcaattcattg
aacatgcccaaaacactagatataattggcgtgataagcgaaaataactatggaaaacca
gaagcacaaatcgaaataagtgattttaagaaggtcacagaaatcaaaaatcagtctgaa
ttgacaaaattatgtataaatgatattctttcaggcttataa
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