KEGG   Ruminococcus albus: Rumal_3908
Entry
Rumal_3908        CDS       T01387                                 
Name
(GenBank) Type I site-specific deoxyribonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
ral  Ruminococcus albus
Brite
KEGG Orthology (KO) [BR:ral00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:ral02048]
    Rumal_3908
Enzymes [BR:ral01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Rumal_3908
Prokaryotic defense system [BR:ral02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Rumal_3908
SSDB
Motif
Pfam: EcoEI_R_C ResIII SWI2_SNF2 DEAD Helicase_C HSDR_N DUF4145 AAA_19 AAA_34 AAA_30 AAA_11 Flavi_DEAD Mnd1 UvrD-helicase
Other DBs
NCBI-ProteinID: ADU24331
UniProt: E6UKY5
LinkDB
Position
pRUMAL02:complement(250597..253857)
AA seq 1086 aa
MKSNFDFLSKYWGTLAKIGKTAESYLYNDPNACIYKLGMFAERLVQEIFANEGLDEPDYD
NTHANRIKILKREGLIDRGGRIDDILYSLRMKRNDAVHKYEDSVDTAKSLLRMAFRLAVW
FMEVYGDYSFKAPDFVMPQNEPIPDYESIIKGLEEQLAKAAKAEPVVTATDGSTSKERAD
KSAEVTEAMELSEAETRIIIDDQLRKYGWEVDTNNLRYSKGTRPQKGRNLAIAEFPTDST
VTKGGYADYALFVGLKLVAIIEAKKASIDIPSVIDYQCKDYARMIKSEHSDYVIKDWNGY
KVPFVFATNGRKYLKQIELKSGIWFLDLRDGANTPKALQGWFSPDGLMEMLDKDIASANQ
TLQNTPYDLLRDPDGLNLREYQIRAIEAAENAIIDGKKTALLSMATGTGKTRTILGMIYR
FIKSNRFRRILFLVDRTALGEQAADVFKEVKIEDLMTLDEIYNIKGLDEKEIDKETKIHI
ATVQSLVKRLIYNEDGTMPSVSDYDLIVVDEAHRGYTLDKELSDDEMLYRNQEDYISKYR
TVIEYFDAVKVALTATPALHTTEIFGKPVFTYSYREAVIDGYLVDHDAPHDIHTKLRDNG
IEYKKGETLAIYDPNTGEVLNSDELEDDMKFEIDKFNKDVITEKFNLAVFNEIAMDFNPD
GEGKTLIYAVDDDHADLIVKILKDIYSKYGIDNDVVKKITGSIEGGNKKKILEAIRQFKN
EAYPKVVVTVDLLTTGIDVPEIVNLVFMRRIKSRILFEQMLGRATRLCSKIDKDHFEIYD
PVGVYETLEPVSNMKPVTPNPQTTFEDLLNGLRVVEKDKQAYQLSLIIAKLQRKSRKISA
KALEQFIYLTGGKDLNAFAKELNDGKVADSTKRALECSEAFAVLDKDRTHRKRPVVIDDH
DDEVVSHERGYGKASKPEDYIEAFRKFVVENLNEINALKIVCTRPSELTRATLKELKMEL
DRHDFTEKQLNTAWNEMTNEDIVADIIAFVRQQAIGSALISHETRVKNAFAKLRQNHKFN
KVQLDWLKRIEKVMLEEAVLDEQMFEQGAFKNNGGFKGIDRRFEGQLHEVIMELNQYLYD
DGGIVA
NT seq 3261 nt   +upstreamnt  +downstreamnt
atgaaatctaattttgattttttgagcaagtattggggaactcttgctaaaatcggaaaa
actgctgaaagctatctctataacgatcctaatgcgtgtatttataagctcggaatgttt
gctgaacgtcttgtacaggagatatttgcgaacgaggggcttgacgagcctgattacgat
aatactcacgccaatagaataaaaatcctgaaacgtgaggggcttattgatcgtggtgga
agaatcgatgatatactgtattctctcagaatgaagcgtaatgacgctgttcataagtat
gaggattcggttgataccgctaaatctttgctcagaatggcattcaggcttgctgtgtgg
tttatggaggtgtatggtgattacagcttcaaagcacctgattttgttatgccccagaat
gagcctatccctgactatgaaagcataatcaaaggcttagaggaacagcttgcgaaagct
gctaaggctgaacctgttgtaacagctaccgacggatcaacttcaaaagaaagagccgac
aagtcagcagaagttacagaagcaatggaactttcagaagctgaaacacgcattatcatt
gatgatcagctcagaaagtacggctgggaggttgatacaaacaatcttcgctattctaag
ggaaccagaccacaaaagggacgtaaccttgctatcgctgagtttccgactgattctacg
gtaactaagggtggttatgcggactatgctctctttgtggggcttaaacttgttgctatt
attgaagcaaagaaagcaagtatagatattccgtctgtaatagactatcagtgcaaagac
tatgcccgtatgataaaatcggagcatagcgattatgttatcaaagattggaacggctat
aaagttccgtttgtgtttgctactaatggcagaaagtatctgaaacagatagagctgaaa
tccggaatatggtttcttgatctgcgtgacggtgcgaatactccaaaggctctgcaaggt
tggtttagccctgacggtcttatggaaatgctcgataaggatattgcttctgctaatcag
acgttgcagaataccccatacgatttactgcgtgatccagatggactgaatctgcgtgaa
tatcagataagagctattgaagctgctgagaatgctatcattgatggtaagaaaacagcg
ttgctgtctatggctacgggaaccggtaagaccagaacaatcctcggaatgatataccgc
tttatcaagagcaaccgtttcagacgtattctgttccttgtggacagaactgcgctcggt
gaacaggcagccgatgtattcaaggaagtcaagatagaggatttaatgactctcgacgag
atatataatatcaaaggtcttgacgaaaaagagattgataaggaaacaaagatacatata
gctactgtccagagccttgtaaaacgcctgatatacaacgaagatggcacaatgccctct
gtttctgactatgacctgattgttgttgatgaagcgcatagaggttatacgctcgacaaa
gaattgagcgatgatgaaatgctgtatcgtaatcaggaagattatatcagcaaatatcgt
actgttatagagtatttcgatgctgtcaaggttgctctcacggctactcctgctctgcat
acaacagagattttcggaaagcccgtgtttacatactcttacagagaagctgtcattgac
ggttatcttgtcgatcacgatgctccgcatgatattcacactaagctccgtgataacggc
attgaatacaaaaagggtgaaacgctcgcaatctacgatccgaacacgggcgaagtcctc
aacagcgatgagcttgaggacgatatgaagtttgaaatagacaaattcaataaggacgta
attactgagaagttcaatttagccgtgtttaatgaaatcgctatggacttcaatcctgac
ggtgagggcaaaacgcttatctatgcggtcgatgacgatcatgctgaccttatcgtaaag
atactgaaagatatttactcgaaatacggtattgataacgatgtagtcaagaaaatcacc
ggaagcatagagggtggcaataaaaagaagatacttgaagcgatacggcagtttaagaat
gaagcctatccaaaggttgttgttactgttgacctgctgacaacaggtattgatgtgcct
gagatcgtcaatcttgtatttatgcgtcgtatcaagtcccgtatcctgtttgagcagatg
ctcggcagagctacgagattgtgcagtaagatagacaaagaccacttcgagatctatgat
cccgtaggtgtctatgaaaccttagagcctgtaagcaatatgaagcctgttacaccaaat
ccccagactacctttgaggacttacttaacggtttgagagttgttgagaaggacaaacag
gcatatcagctcagtttgattattgccaaactgcaaaggaaaagccgtaagatcagtgca
aaagctcttgagcaatttatatacctgacaggcggtaaagaccttaatgcttttgcaaaa
gagctgaatgacggcaaagttgccgactccacaaagagagctttggaatgctcggaggca
tttgctgtgcttgataaagacagaacacatagaaagcgtccagttgtaatagacgatcat
gatgatgaggtcgtatcacatgaaagaggttacggcaaggcaagcaaacccgaagactat
attgaagcattcagaaaatttgttgtggagaaccttaatgaaataaatgcactcaaaatc
gtatgcactcgcccctctgagttgacaagggctactctcaaagagctgaaaatggagctt
gaccgtcatgatttcacggaaaaacagcttaatacagcttggaatgaaatgacaaacgaa
gatattgttgcggatattatcgcatttgttcggcagcaggctattggctcggcgctgata
agtcatgaaacaagggtaaaaaatgcctttgcaaagctgagacagaaccacaagtttaac
aaggttcagcttgactggctgaaacgtatagagaaggtcatgcttgaagaagctgtgctt
gatgagcagatgtttgaacagggtgctttcaagaataatggcggattcaaaggcattgac
cgccgatttgagggacagctccatgaggttattatggaactgaaccaatacttatatgac
gatggaggaatcgtagcttga

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