Rickettsia amblyommatis GAT-30V: MCE_06090
Help
Entry
MCE_06090 CDS
T01787
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ram
Rickettsia amblyommatis GAT-30V
Pathway
ram03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ram00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCE_06090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ram03400
]
MCE_06090
Enzymes [BR:
ram01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCE_06090
DNA repair and recombination proteins [BR:
ram03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCE_06090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AFC70048
UniProt:
H8K2K6
LinkDB
All DBs
Position
complement(1066087..1069452)
Genome browser
AA seq
1121 aa
AA seq
DB search
MLQQKFPAAAKSFFAIDNFTKNLKQDFILSASNEEEALQLYKQALLFSSNENIYYFPSYD
TIPYDHTSPNANILSRRAETLTKLTTNNSNSKLLITHTANLLNKLPPKDFFSKYFLKLSP
KMKFTADELAMFLVENSFTRNAISIDAGEFAVRGEIIDIILPGPKAYRIHFSWGYIESIK
EFNIDTQISTKSCRELIISPANEIVLNSDTISNFKNNYLRNFGVNHTDNPLYEAVISGRK
FTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNNFYSARSEANKLKFN
SFYPTLSPTSLYFTASEITELLERKNNILLTFENSEQASLIENIAATSFIEKKTVFDKLF
EVIKANSHKKIIIGSSVLSSVERIKSIIQNYEYKYNEINKLDEAKASIINVGIMPLNQSF
YTKEYLFITASELLEEKPSSTNTNKTLKNILLELDNLAEGEFVVHKDHGIGQFLKLAALE
IKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSWQRSKAQLKSRIKE
IALHLIQIAAKRKLNSSASVEFDLEAYDKFCANFPFSETEDQLTAINDIKEDLRNGMLMD
RLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN
IKQLSNVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQK
EFLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVIPFDPVIIR
DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYA
GKFDILVSTTIIESGIDIAEANTMIIHRADMLGLSQLYQLRGRIGRGKMRGYAYLTVASY
KKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIKEVGTELYQEML
EEQIAIFKDEPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSHEIEVETF
KDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVMKFYKNADMTDKILKF
VSTYSNQAKIKPDNKLVYIKKLVDKNIIVEANQLLWNLLEV
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaatttccggcggctgccaaatctttctttgcaattgataattttact
aagaatcttaagcaagatttcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttattgttttcttctaatgaaaatatttattactttccaagctatgat
accatcccttatgaccatacgtcaccaaatgcaaatatcttatctagacgtgcagaaaca
ttaaccaagctaacaacaaataatagtaatagcaaattactcatcactcatacagcgaac
ttattaaacaaattaccgccgaaagattttttttctaaatattttttgaaattatcccct
aaaatgaaatttactgcggatgagcttgctatgtttctagtagaaaatagttttacaaga
aatgcgattagcatcgatgccggggaatttgcggttagaggcgaaatcattgatataata
ttgcccggtcctaaagcttatagaattcattttagctggggttatattgaatcaataaaa
gaatttaatattgatacgcaaatttcaactaaatcctgcagggagcttattattagtcct
gcaaatgagatagttttaaatagtgacactataagtaattttaagaataattacttacga
aattttggagttaatcatactgataatcctttatatgaggcggtaatatctggaagaaaa
ttcacaggatatgaacaattactcccattattttacgattcctgctctaacttaatagat
tatttaaacgatcctattttcatattcgataatttgtcaaaacaagccattttagaattt
gaacatagttataacaatttttattcggcaaggtcagaggcaaataaacttaaatttaat
agtttctatcccaccctttcaccgactagcctatattttaccgcttctgaaatcacggaa
ttactagaacgaaaaaataatatactacttacttttgaaaactcagagcaagctagctta
attgaaaatatagctgctacaagttttatagaaaagaaaacggttttcgataaattattt
gaggtgattaaagcaaattctcataagaaaattattataggctcaagcgttttaagtagt
gttgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaataaa
ttagatgaggctaaggcttcaataataaatgtcgggataatgcctttaaatcaaagcttt
tatacgaaagaatatttatttattaccgctagcgaattattagaagaaaaacctagctct
acaaacactaacaaaacacttaaaaatatcttgctggagcttgataatttagctgaaggc
gaatttgttgttcacaaagatcatggaatagggcagtttttaaagctagcagctttagaa
atcaaaggcaaaccacatgattttttaaagattttatatgccggcaatgataaattatat
ataccagttgaaagtatagaggtaataaaaaaatacggcaatgataatgcggagcttgat
aagcttggtagcgtttcatggcaaagaagtaaggcacagcttaaaagtcgtataaaagag
atagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgcttccgtt
gaatttgaccttgaagcatatgataaattttgtgctaattttcctttcagcgaaacggaa
gaccaattaaccgctataaacgatattaaagaagatctaagaaacggtatgttaatggat
agattaatatgcggtgatgtcgggtttggtaaaacagaggtagcaatgcgtgctgtcttt
atggtagcaaaatctctaaatgaacatttacctcaagtagccgtagttgtaccgacaact
attttatgtagtcaacatttttcaaggttcatagaaaggttcaaaggttttggtttaaat
atcaagcaattatctaacgttattagttctaaagaagcaaaaattataagatcggagctt
gaaagcggtaaaataaatataataataggcactcattctttattacataaaaatataaaa
ttctttaatttgaaattgttaataatcgatgaagaacaacatttcggtgtcggtcaaaaa
gaatttcttaaatcgctaaaatcctcttcccatgtacttgcaatgtcggcaacaccgatt
cctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacgccg
cctctaaacaggctggaagtgcgtacctcggttataccgtttgatcccgtgattatcaga
gatgcattattacgcgaacattttagaggcggaagaagcttttatgtagttccaagaatt
aaagatatagaggatatcgaaaaacaattaaaacaaatcgtgccggaattaagctataaa
atagcgcacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttatgcc
ggcaaattcgatatactagtctcaactactattatagaatcaggaattgatatagccgag
gcaaataccatgatcatacatagggctgatatgctgggtcttagtcagctatatcaattg
cgtggtcgaataggtcgaggtaaaatgcggggttatgcctatctaacggtagcaagttat
aaaaagatgacatcgcactccttaagacgcttagagataatacaaaatagttgtgctttg
ggctcaggttttactattgcaagccatgatatggatttacgaggtttcggtaatttgata
ggtgaagaacaatcaggacaaattaaagaagtaggtacagaactctatcaagaaatgctg
gaagaacaaatagctatttttaaagatgaaccgattgtttcagaacaaccctttatcccg
actattaatttgggattatccgtctttattccagataattatgtagccgatgcagccctt
aaacttggactatatagaagaataggtaatttaagtcatgagatagaagtagagacattt
aaagatgagatgattgatagattcggtttactaccgattgaatttaataatttacttgat
attgtaaaaataaaactattatgctttaagttaaatattgaaaatctagattcaggagat
aacggatttgtgatgaaattttataaaaatgccgatatgactgataaaattttaaaattc
gttagtacttactctaatcaggcaaaaatcaaaccagataataaattagtatatatcaag
aaattagtagataaaaatataattgttgaggcaaatcaactactttggaatttattggag
gtgtag
DBGET
integrated database retrieval system
