Rothia amarae: IDM48_01700
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Entry
IDM48_01700 CDS
T06930
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rama
Rothia amarae
Pathway
rama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IDM48_01700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rama03019
]
IDM48_01700
03400 DNA repair and recombination proteins [BR:
rama03400
]
IDM48_01700
Enzymes [BR:
rama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IDM48_01700
Messenger RNA biogenesis [BR:
rama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IDM48_01700
DNA repair and recombination proteins [BR:
rama03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IDM48_01700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AdoHcyase
HTH_Cmi2_C
MGS
GntR
Motif
Other DBs
NCBI-ProteinID:
QNV40185
UniProt:
A0A7H2BKI9
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All DBs
Position
354849..357032
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AA seq
727 aa
AA seq
DB search
MTFDQNHSALHSEALELLRKLTGNPKAIFHEGQFEAIEALVAERRRALVIQRTGWGKSAV
YFIAALLMRRRGAGPALIVSPLLALMRDQVEAASRAGVRAAMVNSSNVTEWEEIRSALEA
GGLDVLLIGPERLNNPAFRTEWLPSIQARMGLLVIDEAHCISDWGHDFRPDYRRIRHLIA
ELPASVPVLATTATANQRVVQDVAEQLNVHGGGEQTPDFSQEVFILRGPLSRDSLRLGVL
QLKHSSERVAWLVEHLGTLEGSGIIYALTVSAAEDTAAALREAGYEVLAYTGKTDPDERL
EVESALKDNRVKALVATSALGMGFDKPDLGFVVHLGAPSSAVAYYQQVGRAGRGAINADV
LLLPGSEDTEIWEYFATASMPTEENTTQLLNALAESTAAGQTLSVPALETRIDVRRSSID
LLLKVLAVEGAVERADRGWVSTGQPWVYDQARYDRVAATRQQEQQAMLDYEHTDVCRMVF
LARELDDMSAQPCGQCDVCAGPWYSQTTSEQAAQIAQNNLKRVGVVIEPRGMWPTGLDRL
NISENGKPVKGKIPPALRAEAGRSVARLSDLGWGNRLREVFITDAAGVAVDGPVPADLGR
AAVKVLGEWDWPERPAAVISIPSPTRPQLADSLARGLGAVGKLKDLGSVQPVAPSEHFGG
NSVFRCAGVFHFFEIPQEVEEFLRENPVSVLLVTDVVDSRWTFTVVARQLLQAGASTVLP
FALASTH
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgaccagaaccattctgccctgcactccgaagccttggagctgttgcgcaag
ctgaccggtaaccctaaggcaatattccacgaggggcagtttgaggcaattgaggcgctg
gttgctgaacgccgtcgggcgttggtgattcagcgaaccggctggggcaagtcggcagtg
tattttattgcggcgttgctgatgcgccgtcgtggggcggggcctgccttaattgtttcg
ccgcttttggcactgatgcgcgatcaggtagaggcggcatcgcgcgcaggtgtgcgtgcg
gcgatggtgaattcatcgaatgtgacggagtgggaagagatccgctcggcgctagaagcg
ggggggctggatgtgctcctcatcggccctgagcgtctaaataacccagccttccgcacc
gaatggctgccgagtatccaagcgcgtatgggtttgttggttattgatgaagcgcactgc
atctctgactgggggcatgatttccgccccgactaccgacgtatccgccatctcattgct
gaattaccggcgagcgttccggtgctggccactaccgctactgctaaccagcgagtggtg
caggacgtcgctgagcagctgaacgtgcacgggggaggagaacagacgccagatttttct
caggaggtcttcattctgcgcggccccctctcgcgcgattccctgcgtctgggcgttctt
cagctcaagcattcatctgagcgcgttgcctggttggttgaacacttaggaacgcttgaa
ggttcgggcattatttacgctttgactgtttcagccgccgaagacaccgctgcagctctg
cgtgaagctggctacgaggtactcgcgtacacgggtaagacagaccccgatgagcgtctt
gaagtcgagagcgctttgaaggacaaccgcgtcaaggctcttgtggccaccagcgccttg
ggcatgggcttcgataaacccgatcttggcttcgtggtacatttgggggcgccgtcgtcg
gcagttgcctactaccagcaggttggacgcgccggccgcggagccatcaacgccgatgtt
ctgcttcttcccggcagcgaagacacagaaatctgggagtatttcgctaccgcatcgatg
cctactgaagaaaacaccacacagcttttgaatgcgctcgctgagtctacggcggcgggg
cagacgctttctgttcctgcgttagaaacccggattgacgtgcgaagaagctccattgat
ttgctcttgaaagtcttggcagtagaaggggcagtagaacgggcggaccgcggttgggta
tcgaccggccaaccctgggtctatgaccaggcgcgttatgaccgcgtggcagctacccgt
cagcaggaacagcaggcgatgctggactatgagcacaccgatgtatgccgcatggtgttt
cttgctcgtgagctcgacgacatgtcggctcaaccatgcggacagtgcgacgtgtgcgca
ggtccctggtattcgcaaaccacaagcgaacaagccgctcagatagctcaaaataacctc
aaaagggtaggcgtggtcattgagccgcggggcatgtggcccactggattggaccggttg
aatatttcagaaaacggaaagccggtgaagggcaaaattcctccagctttgcgggctgaa
gcagggaggtctgtagctcgcctttccgatttaggctggggtaaccggctgcgagaagtc
tttatcactgatgccgcaggcgttgctgtggacggcccggttcctgctgatcttggacgc
gcggcggtcaaggttctgggggagtgggactggcccgagcgtccggctgcggtgatttcc
attccatcccccacgcgccctcaactggctgattcgttggcgcgtgggctgggcgcggtg
ggaaaactcaaagatttgggcagcgtgcaacctgttgcgccctcggaacacttcggcggt
aactcggtttttcggtgtgccggtgttttccacttttttgagattcctcaggaggtggaa
gagttcttgcgcgagaatccggtttcagttttgttggtgacggacgtggtggattcacgc
tggacgttcaccgtagtagcacgccagctcttgcaagcgggggcttcaacagtgttgccg
tttgcattggcttcgacccattag
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