Rothia amarae: IDM48_02795
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Entry
IDM48_02795 CDS
T06930
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rama
Rothia amarae
Pathway
rama03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rama00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IDM48_02795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rama03019
]
IDM48_02795
03009 Ribosome biogenesis [BR:
rama03009
]
IDM48_02795
Enzymes [BR:
rama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IDM48_02795
Messenger RNA biogenesis [BR:
rama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IDM48_02795
Ribosome biogenesis [BR:
rama03009
]
Prokaryotic type
rRNA helicases
IDM48_02795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNV40943
UniProt:
A0A7H2BMP7
LinkDB
All DBs
Position
593418..595391
Genome browser
AA seq
657 aa
AA seq
DB search
MRNKLTKDNSASAGIEFIEPAENTAPNNEAQTASAPAEEEGTRFTDLGLDARVLSALEDI
GYEKPSPIQEQTIPLLLGGRDVVGLAQTGTGKTAAFALPALSRLAELADINGHTKDTQVL
VLAPTRELALQGAEAFTSFATHMENVTVLPIYGGSPYGPQLNGLRRGAQIVVGTPGRVID
HLKKGSLDLSNLQYLVLDEADEMLRMGFADDVEEILSQTPDSKQVALFSATMPKTIRKIA
EQYLNDPAEVRVKSKTSTAPNIRQRYIQVMHSHKLDAMTRVLEVGNYDGVIAFVRTKKET
EELAEKLKARGYQAAAINGDIPQQLRERTVDSLRDGRIDILIATDVAARGLDVERISLVV
NFDIPHDTESYVHRIGRTGRAGREGEAILFMTPREKYMLRQIEKATRQPVEQMHMPSVAD
VNENRKSRFAQQITDTIETEDLSLFRDIITSYQNEHDVDPLEIAAAIAVIAQEGRPFFVE
DIPEPKGRNRDDRNDRGDRGDRDGGRERKPRRQEEGMVNYKLQVGHKNRVNPGMIVGALT
NEGGIKGSQVGSIDIRPHFTIVGLPEDLPRDFFDRLENTELNGEFLNIQRDRGPKGSGNG
GRGGRRFNGGRGGDRDGFKKRFNDDRRGGRFRGGDRDRDDRRGGGRDGGFKKRSNKY
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacaaattgactaaagataactctgcttcagcaggtattgaattcatcgaaccc
gcagaaaatactgcacctaacaacgaagctcagaccgcctcagcacccgctgaagaagaa
ggcacacgcttcaccgatcttggtctggacgcccgtgtgctttcagctcttgaagacatc
ggttacgaaaagccctcacccattcaggagcagaccattcctttgcttttgggtggccgc
gacgttgttggtctagcacagaccggcaccggcaagaccgcagcattcgctcttcccgca
ctgtctcgtttggctgaactggcagacatcaacggacacaccaaagacactcaggtgctt
gttcttgcacctactcgtgaactcgcgcttcagggcgcagaagcattcacttcttttgct
acccatatggaaaacgtaaccgttcttcctatttacggtggctcaccttacggtcctcag
ctcaacggtctacgccgcggtgctcagattgttgtgggtactcccggtcgtgtgatcgac
cacctcaagaagggttctttggacctttcgaacctgcagtacttggtattggacgaagct
gatgaaatgctccgcatgggctttgccgatgacgtcgaggaaattctcagccagactccc
gattctaagcaggttgcactgttctcggctaccatgcccaagaccatccgcaagatcgca
gagcagtaccttaacgatcctgccgaggttcgcgtaaagtctaagacttctaccgctcct
aacattcgtcagcgctacattcaggtcatgcactcgcacaagcttgatgcgatgactcgc
gtgctcgaagtaggtaactacgatggcgttatcgccttcgttcgtaccaagaaggaaact
gaagagctcgctgaaaagctcaaggctcgcggttaccaggcagcagctattaacggtgat
attcctcagcagttgcgtgagcgtaccgttgattcgttgcgcgatggccgtattgatatt
ttgattgctaccgacgtcgcagctcgcggtcttgacgtggagcgtatctccttggttgtg
aacttcgatattcctcatgacaccgaatcttacgttcaccgcattggccgtaccggccgt
gcgggccgtgaaggtgaagcaattctcttcatgactccccgtgagaagtacatgttgcgc
caaatcgagaaggcaacccgtcagccggttgaacagatgcatatgccttctgttgctgat
gtaaacgagaatcgtaaatctcgtttcgctcagcagattacggacactattgagaccgaa
gatctctcactgttccgtgacatcatcaccagctaccaaaatgagcatgatgttgatcct
ttggaaatcgcggctgctattgctgtgattgctcaggagggtcgccccttcttcgtagaa
gatattcctgagcccaagggccgtaaccgcgacgatcgtaacgatcgtggagaccgcggc
gaccgggatggcggccgtgagcgcaagccccgccgtcaagaagagggcatggttaactac
aagttgcaggttggacacaagaatcgtgttaaccccggcatgattgtgggagccttgact
aatgaaggtggcatcaaaggatcacaggttggttccattgatattcgcccacatttcacc
attgttggtttgcctgaagatcttccccgtgatttcttcgaccgtttggaaaacaccgaa
ctaaacggtgagttcttgaacatccagcgtgaccgcggccccaagggtagcggaaatggt
ggacgcggtggacgtcgcttcaatggtggacgcggcggagaccgtgatggtttcaagaag
cgtttcaacgacgatcgccgtggcggcagattccgcgggggcgatcgtgatcgcgatgac
cgccgtggtggtggccgtgacggtggcttcaagaagcgctcgaacaagtactaa
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