Rothia amarae: IDM48_03080
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Entry
IDM48_03080 CDS
T06930
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rama
Rothia amarae
Pathway
rama03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rama00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IDM48_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rama03021
]
IDM48_03080
03400 DNA repair and recombination proteins [BR:
rama03400
]
IDM48_03080
Enzymes [BR:
rama01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IDM48_03080
Transcription machinery [BR:
rama03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IDM48_03080
DNA repair and recombination proteins [BR:
rama03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IDM48_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QNV40414
UniProt:
A0A7H2BL68
LinkDB
All DBs
Position
656781..660674
Genome browser
AA seq
1297 aa
AA seq
DB search
MSNESSLGLMRIGLATAEDIRSWSYGEVKKPETINYRTLKPEKEGLFDERIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITSVDEEARHEDLPNLQAAFDRDKKVLADQRDADINLIARETEEE
LARIEAEGGKAAEKRKLRDAAERQMASVRKNADREIEFEERVWDRFKNLKVADLEGDEAL
YRAMVDKYGMYFEGSMGAESIKKRLENFDMEAEAESLREIIQTGKGQRKTRALKRLKVVN
SFLTTTNSPLGMVLEAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVGGPQLQMHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERSR
SQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVAVPDQDMIIGLFHLTTPREDAAGEGR
TFSSLAEALMALDLHEIELYSKVKILTDNFVAPEGYEFPEGYKEGEPLLVECTVGQVIFN
QALPADYPWFDKVADKKTLGSLINDLAEKYPMIEVARSLDNLKNTGFYYASRSGVTVAVS
DIAAPPSKPAIMESYESQAADIQSQFDMGLIDDNERRTELIDIWTKATDEVAEAMRDNLA
NLNTTINRMVTSGARGNWMQVRQIAGIRGLVANPKGEIMPRPIKSSYREGLTVLEYFIAT
HGARKGLADTALRTANSGYLTRRLVDVSQDVIVREHDCGTHRGLTLPLVQIDDENGTISL
HENVESSIHGRAFAVDVKAEDGTVLAEAGTDVSDPMIEKLYKAGIQDIKVRSVLTCESAV
GVCALCYGRSMASGNLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPR
IQELFEARTPKGVAPISEVSGRISIEDTEKSLKVVVTPDNGDEAIAYPVLRRARLNVAEG
DHVTVGDQLVAGAVDPKEVLRIRGPREAQKHLVDEVQGVYRSQGVGIHDKHVEVIVRQML
RRVTVIDSGDTDLLPGELVENIAFQNANRKAMSEGVRPAAGRPEMMGITKASLATESWLS
AASFQETTRVLTQAAMERKSDPLVGLKENVIIGKLIPAGTGLSRYNNIEVEPTDEAREQM
FQASAGGFNDFSYAAENEGAISAEFQAIPLDDYDFGK
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgaatcttcactcggtttgatgcgtattggcctagccactgctgaggatatc
cgcagctggtcatatggcgaggtcaagaagcctgaaaccattaactaccgaaccctgaag
ccagaaaaagagggcttgttcgacgagcgtatcttcggacctactcgcgactgggaatgc
tactgcggtaagtacaagcgcgtacgtttcaagggtattatctgtgagcgctgtggcgtt
gaggtaacccgtgcaaaggtacgtcgtgagcgtatgggccacattgagcttgctgctcct
gtgactcacatctggtacttcaagggtgttccttcacgcttgggttatctgctcgatttg
gcaccgaaggatcttgaaaagattatttacttcgctgcttacatgattacttctgtggat
gaagaggctcgtcacgaggatcttccgaatctgcaggctgcttttgatcgcgataagaag
gttcttgctgatcagcgcgatgctgatatcaacctgattgctcgcgaaactgaagaagaa
ctggctcgtattgaagctgaaggcggtaaggctgcagagaagcgtaagcttcgcgatgcc
gctgagcgccagatggcttcagtgcggaagaacgctgatcgtgagattgaattcgaagag
cgtgtttgggatcgctttaagaacctgaaggtagctgaccttgaaggtgatgaggctctt
taccgtgccatggtcgataagtacggcatgtactttgaaggttcaatgggtgctgaatct
attaagaagcgccttgagaactttgacatggaagctgaagctgagtcgcttcgcgagatt
attcagacaggtaagggacagcgtaagactcgtgccttgaagcgtttgaaggttgtcaac
tcattcttgactaccaccaactcgcctttgggtatggttcttgaagctgtgcctgtgatt
cctccggaattgcgccccatggtgcagctcgacggcggtcgtttcgcgacttcagacctt
aacgatctgtaccgtcgtgtcatcaaccgtaacaaccgtttgaagcgtctgcttgatctc
ggtgctcctgagattatcgtgaataacgaaaagcgcatgcttcaggaagctgttgactcc
ttgttcgataacggtcgtcgtggccgtcctgttaccggcccgggtaaccgtcctttgaag
tctctctctgacatgctcaagggcaagcagggtcgtttccgccagaaccttctgggtaag
cgcgttgactactcaggtcgttcggttatcgtcggcggtcctcagcttcagatgcatcag
tgcggtctgcctaagcagatggcgcttgagctcttcaagccttttgtgatgaagcgtctg
gttgacctcaaccacgctcagaacattaagtccgctaagcgcatggtggagcgttcacgc
tcacaggtgtgggacgttctggaagaaatcattacggagcaccccgtattactcaaccgt
gcacctactctgcaccgtcttggtattcaggcgttcgaacctcagcttgttgagggtaag
gctatccagctgcatcctctcgtttgctctgcgttcaacgctgatttcgacggcgatcag
atggctgttcacctacccctctcacctgaggctcaggctgaagcacgcattttgatgctt
tcttcaaataatattttgaagccttcagatggccgccccgttgcggttcctgaccaggat
atgatcattggtttgttccatttgaccactcctcgtgaggacgcagccggtgaaggccgt
accttctcctcacttgctgaggcgcttatggctcttgatctgcacgagattgagctgtat
tccaaggtaaagatcctcacagataactttgttgctcctgagggttacgagttccccgag
ggttacaaggagggcgagcctcttctcgtagagtgcaccgtgggtcaggttattttcaac
caggctttgcctgctgattacccctggttcgataaggttgcggataagaagacccttggt
tctttgattaatgatcttgctgagaagtaccccatgattgaggttgctcgctcactagat
aatctgaagaatactggtttctactacgcttcgcgttcaggtgttaccgttgctgtttca
gatattgctgctcctccttcgaagcccgccattatggagagctacgagagccaggctgct
gatattcagagccagtttgatatgggtctgattgacgacaacgagcgtcgtaccgagctc
atcgatatctggaccaaggcaactgatgaagttgctgaggctatgcgcgataacttggct
aacctgaacaccactattaaccgtatggtgacttctggtgctcgtggtaactggatgcag
gttcgtcagattgcaggtatccgtggtctggtggcaaaccccaagggtgagattatgcct
cgccccattaagtcttcctaccgtgaaggcttgaccgtgctcgagtacttcatcgctact
cacggtgctcgtaagggccttgcggataccgcgcttcgtaccgctaactcgggttacttg
acccgtcgtctggtggacgtctctcaggacgtcatcgttcgtgagcacgattgtggtact
caccgcggtttgaccttgccattggttcagattgacgatgaaaacggcaccatttcgctt
catgaaaacgttgaaagctcgattcacggtcgtgcctttgcggttgatgtgaaggctgaa
gacggcaccgttttggctgaggccggtactgacgtttctgatcctatgattgagaagctg
tacaaggctggaatccaagacatcaaggttcgttcggtgctgacctgcgagtccgcagtg
ggcgtttgtgcgctttgctacggtcgttcgatggcatcgggtaacctggttgatattggt
gaggcagtgggcattattgctgcacagtccatcggtgagcccggtacccagctgactatg
cgtaccttccacaccggtggtgttgcatcagcggacgatattactcagggtcttccccgc
attcaagagcttttcgaggcacgtacacctaagggtgttgcaccgatttcagaggtttca
ggtcgtatctctattgaagatactgagaaatcgctgaaggttgttgtaactcctgataat
ggtgatgaagcgattgcttaccccgttcttcgccgtgcgcgtctgaacgttgcagagggc
gatcatgtcaccgttggtgatcagcttgttgccggtgcagttgacccgaaggaagttctg
cgtattcgtggacctcgtgaggctcagaagcacctggtagacgaggttcagggcgtttac
cgttcacagggtgtaggtattcacgataagcacgttgaagttatcgttcgtcagatgctt
cgtcgtgtgaccgtgattgactctggtgataccgatcttcttcccggtgagttggtggaa
aacattgctttccagaatgccaaccgaaaggcgatgtccgagggcgttcgtcctgcggca
ggtcgtccggaaatgatgggtattactaaggcatcgttagctaccgaatcatggctctcc
gctgcgtccttccaggagaccacccgagttttgactcaggcggctatggaacgtaagtct
gatcctttggtgggtctgaaggagaacgtcattatcggtaagttaatccctgccggtacc
ggtttgtctcgttacaacaacatcgaggttgaacctactgatgaggctcgcgagcagatg
ttccaagcttctgcaggtggcttcaacgacttcagctacgctgctgagaatgaaggcgca
atttcagccgagttccaggctatcccgctggatgactacgatttcggcaagtaa
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integrated database retrieval system
