Rothia amarae: IDM48_04690
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Entry
IDM48_04690 CDS
T06930
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rama
Rothia amarae
Brite
KEGG Orthology (KO) [BR:
rama00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rama03019
]
IDM48_04690 (hrpA)
Enzymes [BR:
rama01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IDM48_04690 (hrpA)
Messenger RNA biogenesis [BR:
rama03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IDM48_04690 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_23
HA2_N
ResIII
Sigma70_r4
AAA_25
ABC_tran
T2SSE
TsaE
PhoH
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QNV40702
UniProt:
A0A7H2BM06
LinkDB
All DBs
Position
complement(966963..971324)
Genome browser
AA seq
1453 aa
AA seq
DB search
MSKNHSGSASPSLSHIAATMHAANTRASTPAPQADVAHPVQKNNSARQKSSGATQRKKRG
SARSSQQNQNRNRGERKITSREYKPFIPSTISFPPALPVSERREDIKKAIAENQVVIIAG
ETGSGKTTQIPKMCLELGLGETGLIGHTQPRRLAARSVAERIAEELGQNIGQTVGYQVRF
TSEVGEHSAIKLMTDGILLAEIQNDPLLKKYSTIIIDEAHERSLNIDFILGYLKRIMGQR
SDLKIIITSATIDPERFARHFSPSFVPGVGIVDDSLSAEEKEIAEATLPDDAPPIIEVSG
RTYPVEIRYRPLNVPTEGEDNDADDGLEDEDRDPIEGILDAIRELAAEDPGDILIFFSGE
REIRDAQDAIEDMIRSTRRLPHYEVLPLFGRLSMQEQTQVFRPGSRPRIVLATNVAETSL
TVPGIKYVIDTGTARISRYSSRTKVQRLPIERISQASANQRSGRCGRVSDGIAIRLYSEE
DFLSRPEFTDPEILRTNLAAVILQMTSIGVVKAISDIERFPFVQPPETRAINDGVNLLRE
LGALRQKNFQQATRGRRSPATPLTGVGRKMAALPVDPRLARMIVEADQRGCAKEMMVLAA
ALTVQDPRERPTERRAEADTQHARFKDEKSDFSSYLLLWNFINEKQQELSSSQFRKLCHR
EFLNFLRVREWQDLYAQLAEIGRSARISVSRGRDINPAAHEVDLHKSLLSGLLSHIGLKD
ERARHEYMGARGTRFQIFPGSGLFKKNPEWIVSAELVETSRLWARVNAEVKPEWIEEVGS
HLVKKQYSDPHWSSAQGSVMAHEKVTLFGVPVIADRRVQYWRIDPQAAREMFIRSALVEG
DWRTHHKFFERNQRALAEIEELEARLRRRDLRVDDQTLFDFYDARLPENIYSERHFDRWW
KEERTKNEHLLDFNPDHLIDEEAADYDESLFPRTWTIHTGSGELTLDLRYEFAPSVSIGG
VRSSETKADGIAVQVPILFLNQLEQAPFEWMIPGLRTELITALIKSLPKQLRKNFVPAPD
VAQAAVAKLNAEFSPAEDNLLESLALVLRRLRGIVVDPAAFNWDQVPEYLRFTFQVRNPH
NKILGEGRDIELLKTQLHSHIRSALAASLGASPDTFAAMNKMAQRQQSSAQRGGDQSKGQ
RLALAGKTVTAGHASAAAHGVREQSGLTDWPAQELPRKIERVIATQKVAGFPALFDEGKT
VGIRIFPTEAEAARSQRRGVIRLLHLKVPSPIRYVSDHLSNREKIVFTQNPHGSIDSLIS
DCTVAAVDMLTPAQAPFTHDEFEKVFQQVRAELIESVFQVTKLVADILAEASAVQKKIKK
STSLSVIHAMQDMKAQLDHLIYPGFVAQTGYSQLVHLPRYLKAITQRIEKLGPQVHRDNQ
LMIAVQELEDEYDSALKSLPQGTEVSDELEHVGWMIEELRVSFFAQELGTAYTVSEKRIR
KALRDALENLKNS
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagaatcattcaggctccgcctcaccctcactttcccacattgccgccactatg
catgcggcgaatacccgcgcgtcgacccctgcaccgcaagcagatgttgcacatcctgtg
cagaaaaataactctgcaaggcagaaaagctccggggcaactcagcgtaagaaacgcggg
tcagctcgctcttctcagcagaatcagaaccgtaacagaggcgagcgcaaaataacctct
cgggagtacaagccttttattcccagcaccatcagctttcctcctgcacttccggtctcc
gaacgccgggaagatatcaaaaaagcaattgctgagaaccaggttgttattatcgccggt
gaaacgggctcaggtaagactacccagattcctaaaatgtgtttagaacttggtctgggc
gaaaccgggctgatcgggcatactcagccccgccgtctggctgctcgatctgttgctgaa
cgtattgctgaagaactcggtcagaacattggtcagacagtggggtatcaggttcgcttc
acctccgaggtgggcgagcattcggcgatcaaattgatgaccgacggcatcttgctagca
gagattcaaaatgacccgctactgaaaaagtattcgaccatcattattgatgaagcgcac
gaacgaagcctcaatattgacttcattcttggttatctcaaacgcattatgggtcagcgc
tccgatcttaaaatcatcattacttctgccaccattgaccccgagcgttttgctcgccat
ttttcgcccagctttgtgcctggggtcggaattgtcgatgactctctgagcgctgaagaa
aaggaaattgctgaggcaacgctgccagatgacgcacctcccatcatcgaggtgtcaggc
agaacctatcccgttgaaatccgctaccgtccgctgaatgtgccaaccgagggcgaagac
aacgacgccgacgacggtttagaggacgaagatcgtgatcccatcgagggtatcttggac
gcgattcgcgaattggcggcagaagatcccggcgatatcctcatcttcttctcgggggag
cgagaaatccgcgatgctcaagatgccattgaggacatgattcgctccactcggaggcta
ccccactatgaggtattacccctgttcggccgcctctcgatgcaagagcaaactcaggtg
ttccgccccggttcacgcccgcgcatcgtgttggcaaccaacgttgcagaaacctcactg
acagtacctggtatcaagtatgtgattgatacaggcaccgcccgcatttcacgttattct
tcgcgtaccaaagttcagcgccttcccattgagcgtatttcccaggcgagcgctaaccaa
cggtcgggccgctgtgggcgcgtgtcagatggtattgctattcgtctctattctgaagaa
gatttcctttcccgcccagaatttaccgaccctgagattttgcgtaccaacctggctgcg
gtgattttgcagatgacctctattggagtggtaaaagctatctccgatattgagcgcttt
ccctttgtgcagccgccagagacccgcgctatcaacgatggcgtcaacctcctgcgggag
ctgggcgctctgcgccagaagaacttccagcaggctacgcgtggacgccgttcgcccgct
acgccactgaccggtgtggggcgcaagatggcagcgctacccgttgatccccgtttggcg
cgcatgattgtcgaggcagatcagcgcggttgtgccaaagaaatgatggttctcgccgcg
gcattgactgtgcaagacccgcgagaacggcccaccgagcgtcgggcagaagctgatact
cagcatgcacgcttcaaagacgaaaaatctgacttctccagctatctcttgctgtggaat
ttcatcaacgaaaagcagcaggagctctcttccagtcagttccgcaagttgtgtcatcga
gaattcctgaatttcttgcgagtgcgtgaatggcaggatctttatgcacagctggctgag
attggacggtcagcccgcatctcagtgagccgcggcagagatatcaatcccgcagcccac
gaggtcgatcttcataagtcgctactttcgggcttgctctctcatattggcctcaaagat
gaacgagcccgccacgagtacatgggcgctcggggtacccgtttccaaatcttcccaggt
tctggattgttcaagaaaaatcccgagtggattgtttcggctgaattagtagagacatcc
cgcctgtgggcacgagtcaatgcagaggtcaagcccgagtggattgaagaagtcggctct
cacctggtaaaaaaacagtactctgatcctcattggtcatcggctcaagggtcggtcatg
gcacatgaaaaggtcacactctttggagtgcccgtgattgcggatcgcagagtgcaatac
tggcgtattgaccctcaggcagcacgggaaatgttcattcgctccgccctcgttgaaggc
gactggcgaacccatcacaagttctttgagcgaaatcagcgcgcgttggctgagatcgag
gaactcgaagctcgcctgcgccgtcgtgatctgcgcgtagacgatcagacgctctttgat
ttttacgatgcccggttgccagagaatatctactccgaacgtcattttgatcgctggtgg
aaagaggagcggacaaagaacgagcatctgttggatttcaaccccgatcatctcatcgat
gaagaagctgcagactacgacgaatcgctctttccccgaacctggacgattcataccgga
tcaggcgaactcaccctcgatctgcgctatgaatttgctccatcggtttctatcggggga
gtccgcagttcagagactaaggcagacggaattgccgtgcaggtacctatcctattcctc
aatcaactggagcaagctccctttgagtggatgattcccggtctacgcactgaactcatc
acggcacttatcaagtccttgcctaagcagctgaggaagaattttgtgccggcgcccgac
gtcgcccaagctgcagtggcaaaactcaacgctgagttctcccctgccgaggacaacctc
ctcgaatctttggcactggtgctccgtcgtcttcgaggaattgtagttgaccctgccgcc
tttaactgggatcaggtaccagagtatcttcgcttcacgttccaggtgcgcaaccctcac
aataaaattttgggtgaaggtcgcgatatcgagttactcaagacccagttacactcccat
attcgttctgctctggcagcatcgctgggggcttcacccgatacttttgctgctatgaac
aagatggctcagaggcagcaatcctctgcgcagcgaggtggagaccagtccaagggtcag
cgcctggcactggcgggaaagacggttacagcaggacacgcgtccgcagctgcccatggc
gttcgcgagcaaagtggtttgaccgactggcccgcacaagagcttccgcgcaaaattgaa
cgagtaatcgctacccaaaaagtcgccggttttccggcgctcttcgacgaaggaaaaacc
gtggggattagaatcttccccaccgaagcggaagcagcgcgttcacaacgtcgcggcgtc
attcgtctgcttcatctcaaggtgccctcgcctatccgctatgtgagtgaccatctgtcg
aaccgagagaaaatcgtcttcactcagaatccgcacggttctattgattcgctcattagt
gactgcacagtggcagcggtagatatgttgacaccggcgcaggcgccctttacccacgac
gaatttgaaaaagtttttcagcaggttcgtgcagaactcattgaatcggttttccaagtc
accaagttagtggcggatatcctggcagaagcttcggctgtgcagaagaaaataaaaaag
agcacctcgttgagcgtcattcacgcgatgcaagatatgaaagctcagttggatcacctg
atatatcccggattcgtagcccagacggggtattctcagctggttcatctcccccgctac
ctgaaagcaatcactcagcgcattgagaagctgggaccccaggtgcaccgcgacaatcag
ctcatgattgcggtacaggaactagaagacgaatatgattcagccctgaaatctttgccc
caagggaccgaagtttctgatgaattagaacacgtgggttggatgattgaggagctacgc
gtaagcttctttgctcaagaactgggtacagcctataccgtttccgaaaagcggattcgc
aaagcgctacgagatgctctagagaatctgaaaaattcatag
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