Rhodococcus antarcticus: RHODO2019_02225
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Entry
RHODO2019_02225 CDS
T09186
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHODO2019_02225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rant03021
]
RHODO2019_02225
03400 DNA repair and recombination proteins [BR:
rant03400
]
RHODO2019_02225
Enzymes [BR:
rant01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHODO2019_02225
Transcription machinery [BR:
rant03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHODO2019_02225
DNA repair and recombination proteins [BR:
rant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHODO2019_02225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UZJ25317
LinkDB
All DBs
Position
437161..441084
Genome browser
AA seq
1307 aa
AA seq
DB search
MLDVNFFDELRIGLATAEHIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVDTELRHNELSTLEAEMTVERKRVADQRDADLEARAQKLEAD
VAELEAEGAKSDVRRKVKDGGEREMRQLRDRAGRELERLDEIWSTFTKLAPKQLVVDELL
HRELVDRYGEYFESAMGAESIQKLMASFDIDAEAELLRETIRSGKGQKKLRALKRLKVVA
AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
AQVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFHLTREVEGAKGEGG
AYSTPSEAIMAMDLGVLSVQAKVKIRVSDLRPARGQETELIEAGWTPGTPWLAETSLGRV
MFNQLLPLDYPFVNEEMPKKRQAAIVNDLAERYPMVVVAQTLDKLKDAGFYWATRSGVTI
AISDVIVPPNKQQILDGYEAQADAIEKKFQRGAIASAERQSDLEKIWTAAKEEVAAAMEA
NFPPDNPIPMIVKSGAAGNMQQVVQLAGMRGMVANTKGENIVRPIKANFREGLSVLEYFI
STHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTERGIVMTIAEKLADGTLV
RDAHVETSTYARTLASDAVAQDGHVVVPRGADLGDPALEALLAGGVTEARVRSVLTCESA
TGICATCYGRSMATGKLVDVGEAVGIVAAQSIGEPGTQLTMRTFHTGGIGGGDITGGLPR
VQELFEARVPKGKTPIADVSGRIRLEDTDRFYKITITPDDGGEEVVYEKLSKRSRLKTIA
VDGTERVLADGDHVQVGDQLLEGASDPHEVLRVMGPREVQMHLVDEVQKVYRSQGVSIHD
KHIEVIVRQMLRRVTIIDSGATEFLPGSLTERSEFEAANRRVVAEGNEPAAGRPVLMGIT
KASLATESWLSAASFQETTRVLTDAAINGKSDKLVGLKENVIIGKLIPAGTGINRYRNIQ
VQPTEEARAAAYAVPAYDDGFYSPDVFGAASGAAVPLDDYGFGGDYR
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccgcatcggtcttgccacggcggagcacatc
cgccagtggtcctacggcgaggtcaagaagcctgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgggccaaggtccgccgtgagcggatgggccacatcgagctcgccgccccg
gtgacccacatctggtacttcaagggcgtcccgtcgcggctgggctacctcctggacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacgtcatcgtcggtgtcgac
accgagctgcgccacaacgagctctcgacgctcgaggccgagatgacggtggagcgcaag
cgcgtggccgaccagcgcgacgccgacctggaggcccgggcccagaagctcgaggccgac
gtcgccgagctcgaggccgagggtgccaagagcgacgtccgccgcaaggtcaaggacggt
ggcgagcgcgagatgcgtcagctccgcgaccgcgcgggccgcgagctcgagcgactggac
gagatctggtccaccttcaccaagctcgcccccaagcagctcgtcgtcgacgagctgctg
caccgcgagctcgtggaccgctacggcgagtacttcgagtccgcgatgggtgcggagtcg
atccagaagctgatggcgagcttcgacatcgacgccgaggccgagctgctccgcgagacc
atccgcagcggcaaggggcagaagaagctccgtgcgctcaagcggctcaaggtcgtcgca
gcgttccaggccacccgcaacaacccgcagggcatggtgctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgggtcatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtccgtggacgcc
ctgttcgacaacggccgtcgtggccgccccgtcacgggtccgggcaaccggcccctgaag
tccctgagcgacctgctcaagggcaagcagggacggttccgccagaacctgctgggcaag
cgcgtcgactactccggccgctcggtcatcgtcgtcggcccccagctgaagctgcaccag
tgcgggctgcccaagctcatggcgctcgagctgttcaagcccttcgtgatgaagcggctg
gtggacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgccagcgt
gcacaggtgtgggacgtgctcgaggaggtcatctccgagcacccggtgctgctcaaccgt
gcgccgaccctgcaccgcctgggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagctgcacccgctggtgtgcgaggccttcaacgccgacttcgacggcgaccag
atggcggtccacctgccgctgagcgccgaggcgcaggccgaggcccgcatcctcatgctg
tcctcgaacaacatcctgagcccggcctcgggccgtccgctggccatgccgaggctggac
atggtgaccgggctgttccacctcacccgtgaggtggagggcgccaagggcgagggtggc
gcgtactccacgccgtccgaggcgatcatggcgatggacctcggtgtgctctcggtccag
gccaaggtcaagatcagggtctccgacctgcgccccgcgcgcgggcaggagacagagctg
atcgaggccggctggaccccgggcaccccgtggctcgcggagacgtccctgggtcgggtg
atgttcaaccagctcctgcccctggactaccccttcgtgaacgaggagatgcccaagaag
cgccaggccgcgatcgtcaacgacctggccgagcggtacccgatggtcgtcgtcgcccag
acgctcgacaagctcaaggacgccggcttctactgggccacccgctcgggcgtcaccatc
gccatctccgacgtcatcgtgccgccgaacaagcagcagatcctcgacggctacgaggcc
caggccgacgcgatcgagaagaagttccagcggggggccatcgcctccgccgagcggcag
agcgacctcgagaagatctggaccgccgccaaggaggaggtcgccgccgccatggaggcg
aacttcccgccggacaaccccatcccgatgatcgtgaagtcgggtgcggccgggaacatg
cagcaggtcgtccagctggccggcatgcgcgggatggtggccaacaccaagggcgagaac
atcgtccggcccatcaaggcgaacttccgcgagggcctgtccgtgctggagtacttcatc
tccacgcacggtgcccgcaagggtctcgccgacaccgcgctgcggaccgccgactcgggg
tacctcacccggcgtctggtggacgtgtcccaggacgtcatcgtccgcgagaccgactgc
ggcaccgagcgcggcatcgtgatgaccatcgcggagaagctggccgacgggacgctcgtc
cgcgacgcccacgtcgagaccagcacgtacgcccgcacgctggcctccgacgcggtggcc
caggacggtcacgtcgtggtcccgcgtggtgccgacctgggcgaccccgccctggaggcg
ctgctcgccgggggcgtcaccgaggcccgggtccgctcggtcctcacctgcgagtcggcc
accggcatctgcgcgacctgctacggccgctcgatggccaccggcaagctcgtggacgtg
ggcgaggcggtgggcatcgtcgcggcgcagtccatcggcgagcccggcacgcagctgacc
atgcgcaccttccacacgggtggcatcggtggtggcgacatcaccggcggcctgccccgc
gtgcaggagctgttcgaggcccgggtccccaagggcaagacgccgatcgccgacgtctcc
ggccggatccggctcgaggacaccgaccgcttctacaagatcaccatcaccccggacgac
gggggcgaggaggtcgtgtacgagaagctgtccaagcgctcgcgcctgaagaccatcgcg
gtcgacggcacggagcgcgtgctggccgacggtgaccacgtgcaggtgggcgaccagctg
ctcgagggggcctccgacccgcacgaggtgctgcgcgtgatgggtccgcgcgaggtgcag
atgcacctcgtcgacgaggtccagaaggtgtaccggagccagggcgtgtcgatccacgac
aagcacatcgaggtcatcgtgcggcagatgctgcgtcgcgtgacgatcatcgactccggg
gcgaccgagttcctgccgggctcgctcaccgagcgcagcgagttcgaggcggccaaccgg
cgagtggtggcggagggcaacgagcccgccgccggccgtccggtgctgatgggcatcacc
aaggcctccctggccaccgagtcgtggctgtcggccgcgtccttccaggagaccacccgg
gtgctcaccgacgccgcgatcaacggcaagagcgacaagctggtgggtctcaaggagaac
gtcatcatcggcaagctcatcccggccggcaccggcatcaaccggtaccggaacatccag
gtgcagccgaccgaggaggcccgggccgcggcctacgccgtgccggcctacgacgacggg
ttctactcgcccgacgtcttcggtgcggccagcggtgcggccgtgcccctggacgactac
ggcttcggcggcgactaccgctga
DBGET
integrated database retrieval system
