Rhodococcus antarcticus: RHODO2019_11390
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Entry
RHODO2019_11390 CDS
T09186
Name
(GenBank) translation initiation factor IF-2 N-terminal domain-containing protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHODO2019_11390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rant03019
]
RHODO2019_11390
03009 Ribosome biogenesis [BR:
rant03009
]
RHODO2019_11390
Enzymes [BR:
rant01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RHODO2019_11390
Messenger RNA biogenesis [BR:
rant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHODO2019_11390
Ribosome biogenesis [BR:
rant03009
]
Prokaryotic type
rRNA processing factors
RHODO2019_11390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
UZJ23806
UniProt:
A0ABY6NWP6
LinkDB
All DBs
Position
complement(2338643..2341768)
Genome browser
AA seq
1041 aa
AA seq
DB search
MAQIVPPENTDLPTRLRVHALAKLLGVTSKAVLVELERLGSAVGSAQSSIDRAVAEQVRA
ALAPAAASPAPEPAAEPEPTAPPTAAAPAVQAPLFMAPEPVAAPPRRRRASRPAAPAEAD
VPTEVTDAAPAEPAAAQAPVAPAAETPEADQSPPSSGRGRRRRTSKPADAEGDAPTTGTP
AAASEEPSDPDAQDHDQSDDSLDEDGQPKRRRRGRRGRGRGRGPSADEQNDEGSESTGSE
PQRDGDQAVPPAAEDTSDDADERDDDAEDSSDEDGGNGRRRRRRRRRRSSGESAEGETQT
DDDPPNTVVHEREPRARRSRGGRGESRDKGDAVREGSDEVQGITGSTRLEAKRQRRRDGR
DVGRRRPPILSESEFLARREAVDRKMVVRQHGQQTQVAVLEDDVLVEHFVTSASSTAMVG
NIYVGRVQNVLPSMEAAFLDVGRGRNGVLYAGEVDWDAAGLGGRSRKIEQALHSGDPVLV
QVSKDPVGHKGARLTTQISLPGRFLVYVPGGGSTGISRKLPDTERKRLKDILKRIVPAEA
GVIIRTASEGVSEEELAKDVERLQAQWEDISAKAAAATAGGAKFTAPVALHEEPDLLVKV
VRDLFNEDFSSLVVAGEDAWGTVERYVSSVAVDLLPRVQRWTEDTDVFAAHRIDEQLAKA
MDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNIEAAEEIVRQMRLR
DIGGMIVVDFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKRMGAGLI
EEFSVPCEHCHGRGVIVQAEPVVQSSTGGARAESAGTGRDRRHDRPATAAPVVLDPGPLV
RSTPPVPGPKGRPVSAPAPVTSAAEETAAEVSETSTTVAESTPEPAVATPEPAPARRSRA
RRASRPASAPTDGDAVAGEPVVVEPVVAEPAAVEPAAPVEPVVDELVVPVVEPVEDAPVV
APPARRSRARRTASRPEAAPESGTAPVVVAVAVPESPAVDPAVVTVLPEAAAPPVEQPAV
TRPRRRRAAGRPAGPPVGESA
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gtggcccagatcgtgccgcccgagaacaccgacctccccacccgcctgcgggtgcacgcc
ctggcgaagctgctgggggtgacgagcaaggccgtgctggtcgagctcgagcgcctcggc
tccgccgtcggcagcgcccagtcgagcatcgaccgcgccgtcgccgagcaggtgcgcgcc
gcgctcgccccggccgccgcgagcccggctccggagccagccgcggagccggagcccacg
gccccgcccacagccgccgccccggctgtccaggcgccgctgttcatggcccccgagccc
gtggccgccccgccgcgccgccgccgcgcgagccgtcccgccgccccggccgaggccgac
gtgcccaccgaggtcaccgacgccgcgcctgccgagcccgcggccgcgcaggcgccggtc
gcgcccgccgccgagacccccgaggcggaccagtcccccccgtcgtcgggtcgcggccgc
cgccgccgcacgtccaagccggccgacgccgagggcgacgccccgacgaccggtaccccc
gcagccgcgtccgaggagccgtcggaccccgacgcccaggatcacgaccagtccgacgac
tcgctcgacgaggacggccagcccaagcgccgccgccgcgggcgccgtggccgtggccgt
ggccgtggcccgtccgccgacgagcagaacgacgaggggtccgagtccaccggctccgag
ccgcaacgagacggtgaccaggccgtcccgcccgccgccgaggacacctccgacgacgcc
gacgagcgcgacgacgacgcggaggactcctccgacgaggacggcggcaacggccggcgt
cggcgtcggcgtcggcgtcgccgctcctccggggagtccgccgagggggagacccagacc
gacgacgacccgcccaacacggtcgtgcacgagcgcgagccgcgcgcccgccgcagccgg
ggcggtcggggcgagtcccgcgacaagggtgacgccgtccgcgagggctccgacgaggtc
cagggcatcaccggctccacccggctcgaggccaagcgccagcgccgccgcgacggccgt
gacgtgggtcggcgtcgtccgccgatcctgtcggagtcggagttcctggcccgtcgtgag
gccgtcgaccggaagatggtcgtccgccagcacgggcagcagacccaggtggccgtcctg
gaggacgacgtcctcgtcgagcacttcgtcaccagcgccagctccacggccatggtcggc
aacatctacgtcggccgcgtccagaacgtcctgcccagcatggaggccgcgttcctcgac
gtcggtcggggccgcaacggcgtgctctacgccggcgaggtcgactgggacgccgccggc
ctcggtggccgctcccgcaagatcgagcaggcgctgcactccggcgacccggtgctcgtg
caggtcagcaaggacccggtcggccacaagggtgcccgcctgaccacccagatcagcctg
cccggtcgcttcctggtctacgtccccggcggtggctccaccggtatcagccgcaagctg
cccgacaccgagcgcaagcggctcaaggacatcctcaagcgcatcgtcccggccgaggcg
ggcgtcatcatccgcaccgcgtcggagggtgtgagcgaggaggagctcgccaaggacgtg
gagcggctccaggcgcagtgggaggacatctccgccaaggccgcggcggccaccgcgggc
ggggccaagttcaccgcacccgtcgcgctgcacgaggagcccgacctgctggtcaaggtc
gtccgcgacctgttcaacgaggacttcagctcgctcgtggtagccggtgaggacgcgtgg
ggcaccgtcgagcgctacgtctcctcggtcgcggtcgacctgctcccacgcgtgcagcgc
tggaccgaggacaccgacgtgttcgcggcgcaccgcatcgacgagcagctggccaaggcg
atggaccgcaaggtctggctgccctcgggcggcacgctggtcatcgaccgcaccgaggcg
atgaccgtggtcgacgtcaacaccggcaagttcaccggtgccggcggcaacctcgaggag
acggtcacccgcaacaacatcgaggccgccgaggagatcgtgcggcagatgaggctgcgc
gacatcggcggcatgatcgtcgtggacttcatcgacatggtgctggagagcaaccgtgac
ctggtcctgcgacggctcaccgagtgcctcggtcgggaccgcacccgccaccaggtgtcc
gaggtgacctcgctcggcctggtgcagatgacgcgcaagcgcatgggtgccgggctcatc
gaggagttctccgtcccctgcgagcactgccacggacgcggcgtgatcgtgcaggccgag
ccggtggtgcagtcctccaccgggggcgcccgggccgagtccgccggcaccggccgcgac
cgtcgccacgaccggcccgccaccgcggcaccggtggtgctggacccgggcccgctggtc
cgcagcacccctcccgtgcccgggcccaaggggcgccccgtctcggccccggccccggtc
accagcgcggccgaggagacggccgccgaggtgtcggagacgtcgaccacggtcgccgag
tccacgcccgagccagccgtcgccaccccggagccggcgcccgcccggcgctccagggcc
cgtcgggcctcccgcccggcgtccgcaccgaccgacggtgacgccgtggccggggagccg
gtggtcgtggagccggtggttgctgagccggcggccgtcgagcccgcagccccggtggag
cccgtggtcgatgagcttgtggtcccggtcgtggagccggtggaggacgcgccggtggtc
gccccgccggcccggcgcagccgcgcccgccggaccgcctcgcgccccgaggcggccccg
gagtccggcaccgcacccgtggtggtcgcggtcgcggtcccggagtcccccgcggtggat
cccgccgtggtgaccgtgctcccggaggccgctgccccgcccgtggagcagcccgccgtc
acccggccccgccgccggcgcgcagccggccgtccggccgggcccccggtgggggagtcg
gcgtga
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