Rhodococcus antarcticus: RHODO2019_12970
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Entry
RHODO2019_12970 CDS
T09186
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHODO2019_12970 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rant03400
]
RHODO2019_12970 (mfd)
Enzymes [BR:
rant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHODO2019_12970 (mfd)
DNA repair and recombination proteins [BR:
rant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHODO2019_12970 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
LSDAT_prok
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZJ24076
LinkDB
All DBs
Position
complement(2656871..2660497)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTTPAPALAGLLLAAVADPALQAVVEAAGAAHLEIEGPTSSRPFVVAALAATAPVLVVTA
TGREADDLGAAAAEMLGADRVAVFPSWETLPHERLSPRADTVGRRLEVLRRLAHPDLQGE
LRVVVTTVRSLVQPMAPGLGDVEPVRLRVGTEQPLDELVERLVELAYARVDMVGKRGEFA
VRGGILDVFPPTADHPVRVELWGDEVSELRPFSVGDQRSIAELSTDELIAPGCRELLLTA
DVREKAATLAEAHREDAALVEMLDKLASGIPVEGMEALLPVLRGGELQLLSEVLPAGAHV
LVCDPEKVRTRATDLVRTGQEFLEASWTAASVGGAAPLDPKGLNLGASAYRSLSQVRSAT
EAAGVPWWSLSPLVSGRGREEGVLSLDLTAVTSARGAEDEVAATFASLRAHAAGGGTAVV
VVAGAGTATRVLERMAEAEVPAVHGEPGARPAAGRVTVLQGCLVDGLVAPGARLVVITET
DLTGNRAASTADGRRLPAKRRNQVDPLALTAGDMVVHDQHGIGKFVEMVERTVGGARREY
LVIEYAAGKRGHPGDRLFVPMESLDQLSRYVGGEMPSLSKLGGSDWQNTKRKARKAVREI
AGELVQLYAARQAAPGHAFAPDSPWQRELEDAFPFTETVDQLTAINDVKADMEKAVPMDR
VICGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLSQQHLQTFTERMSGFPVVIKGLS
RFTDPSEVAGVMEGLADGTVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKA
MRTAVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPILTYVGAYDDKQVAAALRR
ELLRDGQVFYVHNRVSSIDRAAAKIRELVPEARVAVAHGQMHEELLEKTVQGFWEREFDV
LVCTTIIETGLDISNANTLLIERADSLGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTE
TAYDRLSTIAANSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYIRLVGEAVE
AFRAIADGRGVPLQEEVKEVRVDLPVDAHIPPDYVTSDRLRLEAYRKTAAATDVEGLSAV
LAELVDRYGAPPEPVDNLMAVARLRLLCREHGVTEVTTAGTQLKVGPLDLLDSQQLRLKR
LHPGAQWKPTSKVVALPLPRAGGGGIGSGRLRDVDLLQFVADLLLQLAGTPKGSVDVSAV
TARVHEKV
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
gtgaccacccccgctcctgccctcgccggcctcctcctcgcggccgtcgcagatcccgcc
ctgcaggccgtggtcgaggccgccggtgccgcccacctggagatcgagggcccgacgtcc
tcgcgtcccttcgtcgtggccgccctcgccgccacggccccggtcctggtcgtcaccgcc
accggccgggaggccgacgacctgggggcggctgccgcggagatgctcggcgcggaccgg
gtggcggtcttcccgtcctgggagacgctgccccacgagcggctcagcccccgggcggac
acggtcgggcgccggctggaggtgctgcgccgcctggcccaccccgacctgcagggcgag
ctgcgcgtcgtcgtcaccaccgtccgctccctggtgcagccgatggccccgggcctgggc
gacgtcgagcccgtgcggctgcgcgtgggcaccgagcagccgctggacgagctcgtcgag
cggctcgtggagctggcctacgcgcgcgtggacatggtgggcaagcgcggggagttcgcg
gtccgcggcggcatcctcgacgtcttccccccgacggccgaccaccccgtgcgggtggag
ctgtggggcgacgaggtcagcgagctgcgaccgttctcggtgggcgaccagcgctccatc
gccgagctcagcaccgacgagctcatcgcacccggctgtcgcgagctgctgctcaccgcc
gacgtgcgggagaaggccgccaccctggccgaggcgcaccgcgaggacgccgcactggtg
gagatgctggacaagctcgcctcgggcatccccgtggagggcatggaggccctgctgccc
gtgctgcggggcggggagctgcagctgctctccgaggtgctgcccgccggcgcgcacgtg
ctggtctgcgacccggagaaggtgcgcacccgcgccaccgacctggtgcgcaccggccag
gagttcctggaggcgagctggacggccgcgtcggtgggcggggcggccccgctggacccg
aagggactgaacctcggggcctcggcctaccggagcctgagccaggtgcgcagcgccacc
gaggccgcgggtgtcccgtggtggtcgctgagcccgctggtctccggccgcgggcgcgag
gagggtgtgctcagcctcgacctcaccgccgtcacctccgcccggggcgccgaggacgag
gtggccgcgaccttcgcgtccctgcgcgcccatgccgcgggcggaggcaccgccgtggtc
gtcgtggccggcgccggcaccgccacccgggtgctggagcggatggccgaggccgaggtg
cccgcggtgcacggcgagcccggggcgcgtccggccgccggccgcgtcaccgtgctgcag
ggctgcctcgtcgacgggctcgtggcacccggcgcacgcctcgtggtcatcaccgagacc
gacctgaccggcaaccgcgcggcgtccacggccgacggtcgccggctgcccgccaagcgc
cgcaaccaggtggacccgctggccctgaccgccggggacatggtggtccacgaccagcac
ggcatcggcaagttcgtggagatggtcgagcgcaccgtgggcggggcccggcgggagtac
ctcgtcatcgagtacgcggccggcaagcgcggccaccccggtgaccggctgttcgtgccc
atggagagcctggaccagctctcccgctacgtcggcggcgagatgccctcgctgagcaag
ctcgggggatcggactggcagaacaccaagcgcaaggcgcgcaaggccgttcgcgagatc
gccggggagctcgtgcagctctacgcggcgcgccaggccgcccccgggcacgccttcgcc
ccggacagcccctggcagcgcgagctcgaggacgcgttcccgttcaccgagaccgtcgac
cagctcaccgccatcaacgacgtcaaggccgacatggagaaggccgtcccgatggaccgc
gtgatctgcggcgacgtgggctacggcaagaccgagatcgcggtgcgcgcggcgttcaag
gccgtgcaggacggcaagcaggtggcggtgctcgcgccgacgacgctgctgagccagcag
cacctgcagaccttcaccgagcgcatgtccggcttccccgtcgtcatcaagggcctgagc
cgcttcaccgacccgtcggaggtcgccggcgtcatggagggcctggccgacggcaccgtc
gacatcgtcatcggcacccaccgcctgctgcagaccggcgtgcgctggaaggacctcggc
ctggtggtggtggacgaggagcagcgcttcggcgtggagcacaaggagcacatcaaggcg
atgcgcaccgcggtggacgtgctcaccatgagcgccacccccatcccgcggacgctggag
atgagcctggcgggcatccgggagatgtcgacgatcctcaccccgcccgaggagcgccac
ccgatcctgacctacgtcggcgcctacgacgacaagcaggtggctgcggccctgcgccgc
gagctgttgcgcgacggccaggtgttctacgtgcacaaccgggtctccagcatcgaccgg
gccgcggccaagatccgcgagctcgtgcccgaggcgcgggtggccgtggcccacgggcag
atgcacgaggagctgctggagaagacggtgcagggcttctgggagcgcgagttcgacgtg
ctcgtgtgcaccacgatcatcgagaccggcctggacatctccaacgccaacacgctgctc
atcgagcgggcggactccctgggcctgagccagctccaccagctgcgcgggcgcgtcggg
cgcagccgggagcgcggctacgcctacttcctctacccgccggagaagccgctcaccgag
accgcctacgaccggctctccaccatcgcggcgaactccgacctgggcgccggcatggcc
gtggccatgaaggacctggagatccggggcgcgggcaacgtgctcggcgccgagcagtcc
ggtcacgtggccggggtcggcttcgacctctacatccgtctggtcggcgaggcggtggag
gcgttccgggccatcgccgacggccggggcgtgccgctgcaggaggaggtcaaggaggtg
cgggtggacctgccggtggacgcgcacatcccccccgactacgtcaccagcgaccggctg
cggctggaggcctaccgcaagaccgcggccgcgacggacgtcgagggactctccgcggtc
ctcgccgagctggtcgaccgctacggagcgccgcccgagccggtggacaacctcatggcc
gtggcccggctgcggctgctgtgccgggagcacggggtcaccgaggtcaccaccgcgggc
acgcagctcaaggtcggcccgctggacctgctcgactcccagcagctgcggctcaagcgg
ctgcacccgggtgcgcagtggaaaccgacgtccaaggtggtggcgctgccgctgccgcgg
gcgggcggcggaggcatcggttccggccggctgcgtgacgtggacctgctgcagttcgtc
gccgacctgctgctccagctcgccggtacgccgaagggcagcgtggacgtctccgccgtg
accgcgcgggtgcatgagaaggtgtga
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integrated database retrieval system
