Entry |
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Name |
(GenBank) DEAD/DEAH box helicase
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KO |
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Organism |
rant Rhodococcus antarcticus
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:rant00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
RHODO2019_14250
09124 Replication and repair
03420 Nucleotide excision repair
RHODO2019_14250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:rant03021]
RHODO2019_14250
03400 DNA repair and recombination proteins [BR:rant03400]
RHODO2019_14250
Enzymes [BR:rant01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHODO2019_14250
Transcription machinery [BR:rant03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
RHODO2019_14250
DNA repair and recombination proteins [BR:rant03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
RHODO2019_14250
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
2917950..2919632
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AA seq |
560 aa
MTDGPLIVQSDKTLLLEVDHAQAGEARQAVAPFAELERAPEHIHTYRITPLALWNARAAG
HDAEQVVDALVRFSRYAVPQPLLVDIVDTMGRYGRLQLVKSPVHGLVLISLDRAVLEEIL
RHKKIAPMLGARVDEDTIVVHPSERGHLKQVLLKVGWPAEDLAGYVDGEAHEISLDTEAH
DGSPAWELRDYQQMAADSFWAGGSGVVVLPCGAGKTMVGAAAMARAKATTLILVTTTVAG
RQWKRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRKTKGEYRHLELFDSRDWGL
VIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEA
QGWIAPADCVEVRVTLTDAERLAYATAEPEERYKLCSTARTKMPVVKAILEKHKGAPTLV
IGAYLDQLGELGEALDAPIIQGSTTNKEREKLFDAFRRGEIRVLVVSKVANFSIDLPEAS
VAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDADYAAHRQRFLAEQGY
AYRITDADDILGPPIPGTTP |
NT seq |
1683 nt +upstreamnt +downstreamnt
gtgaccgacggacccctgatcgtccagtccgacaagaccctgctgctcgaggtcgaccac
gcccaggccggtgaggcccgccaggccgtcgccccgttcgccgagctcgagcgagccccc
gagcacatccacacctaccggatcaccccgctcgcgctgtggaacgcccgcgccgcaggt
cacgacgcggagcaggtcgtcgacgcgctggtccggttctcccgctacgcggtgccgcag
ccgctgctggtcgacatcgtcgacaccatgggccgctacggccgcctgcagctggtgaag
agcccggtgcacggcctggtgctcatcagcctcgaccgcgccgtgctcgaggagatcctg
cggcacaagaagatcgccccgatgctcggcgcccgggtggacgaggacaccatcgtcgtg
cacccctccgagcgtgggcacctcaagcaggtcctgctcaaggtcggctggcccgcggag
gacctcgcgggctacgtggacggcgaggcgcacgagatctccctggacaccgaggcgcac
gacggctcgcccgcctgggagctgcgcgactaccagcagatggcggcggactcgttctgg
gcgggcgggtccggcgtggtggtgctgccctgcggcgcgggcaagacgatggtcggggcc
gctgcgatggcccgggccaaggcgaccaccctgatcctggtgacgaccaccgtcgccggg
cggcagtggaagcgcgagctcatcgcccgcacctcgctcaccgaggaggagatcggcgag
tactccggggagcgcaaggagatccgtccggtcaccatcgcgacgtaccaggtgatcacc
cgcaagaccaagggcgagtaccgccacctcgagctgttcgactcccgcgactggggcctg
gtgatctacgacgaggtccacctgctgccggccccggtgttccggatgacggcggacctg
cagagccggcggcgcctggggctcaccgccaccctggtgcgcgaggacggccgcgagggc
gacgtgttcagcctcatcgggcccaagcgctacgacgccccgtggaaggacatcgaggcc
cagggctggatcgccccggcggactgcgtcgaggtgcgggtgaccctcaccgacgccgag
cgcctggcctacgccacggccgagccggaggagcgctacaagctgtgctccaccgcgcgc
accaagatgccggtggtcaaggcgatcctggagaagcacaagggtgcgccgaccctggtc
atcggggcctacctcgaccagctgggcgagctcggggaggccttggacgccccgatcatc
cagggctccacgaccaacaaggagcgcgagaagctgttcgacgcgttccgccggggggag
atcagggtgctcgtggtctccaaggtcgcgaacttctcgatcgacctgcccgaggcctcc
gtggcggtgcaggtcagcggcacgttcggctcgcgccaggaggaggcgcagcggctcgga
cggctgctgcggcccaagcacgacggcggacaggcgcacttctactccgtggtcgcgcgg
gacacgctggacgccgactacgccgcgcaccggcagcgcttcctggccgagcagggctac
gcctaccggatcaccgacgccgacgacatcctcggcccgccgatccccggcaccactccc
tga |