KEGG   Rhodococcus antarcticus: RHODO2019_14250
Entry
RHODO2019_14250   CDS       T09186                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
rant  Rhodococcus antarcticus
Pathway
rant03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rant00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    RHODO2019_14250
  09124 Replication and repair
   03420 Nucleotide excision repair
    RHODO2019_14250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rant03021]
    RHODO2019_14250
   03400 DNA repair and recombination proteins [BR:rant03400]
    RHODO2019_14250
Enzymes [BR:rant01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     RHODO2019_14250
Transcription machinery [BR:rant03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     RHODO2019_14250
DNA repair and recombination proteins [BR:rant03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     RHODO2019_14250
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom DUF7108
Other DBs
NCBI-ProteinID: UZJ24304
LinkDB
Position
2917950..2919632
AA seq 560 aa
MTDGPLIVQSDKTLLLEVDHAQAGEARQAVAPFAELERAPEHIHTYRITPLALWNARAAG
HDAEQVVDALVRFSRYAVPQPLLVDIVDTMGRYGRLQLVKSPVHGLVLISLDRAVLEEIL
RHKKIAPMLGARVDEDTIVVHPSERGHLKQVLLKVGWPAEDLAGYVDGEAHEISLDTEAH
DGSPAWELRDYQQMAADSFWAGGSGVVVLPCGAGKTMVGAAAMARAKATTLILVTTTVAG
RQWKRELIARTSLTEEEIGEYSGERKEIRPVTIATYQVITRKTKGEYRHLELFDSRDWGL
VIYDEVHLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEA
QGWIAPADCVEVRVTLTDAERLAYATAEPEERYKLCSTARTKMPVVKAILEKHKGAPTLV
IGAYLDQLGELGEALDAPIIQGSTTNKEREKLFDAFRRGEIRVLVVSKVANFSIDLPEAS
VAVQVSGTFGSRQEEAQRLGRLLRPKHDGGQAHFYSVVARDTLDADYAAHRQRFLAEQGY
AYRITDADDILGPPIPGTTP
NT seq 1683 nt   +upstreamnt  +downstreamnt
gtgaccgacggacccctgatcgtccagtccgacaagaccctgctgctcgaggtcgaccac
gcccaggccggtgaggcccgccaggccgtcgccccgttcgccgagctcgagcgagccccc
gagcacatccacacctaccggatcaccccgctcgcgctgtggaacgcccgcgccgcaggt
cacgacgcggagcaggtcgtcgacgcgctggtccggttctcccgctacgcggtgccgcag
ccgctgctggtcgacatcgtcgacaccatgggccgctacggccgcctgcagctggtgaag
agcccggtgcacggcctggtgctcatcagcctcgaccgcgccgtgctcgaggagatcctg
cggcacaagaagatcgccccgatgctcggcgcccgggtggacgaggacaccatcgtcgtg
cacccctccgagcgtgggcacctcaagcaggtcctgctcaaggtcggctggcccgcggag
gacctcgcgggctacgtggacggcgaggcgcacgagatctccctggacaccgaggcgcac
gacggctcgcccgcctgggagctgcgcgactaccagcagatggcggcggactcgttctgg
gcgggcgggtccggcgtggtggtgctgccctgcggcgcgggcaagacgatggtcggggcc
gctgcgatggcccgggccaaggcgaccaccctgatcctggtgacgaccaccgtcgccggg
cggcagtggaagcgcgagctcatcgcccgcacctcgctcaccgaggaggagatcggcgag
tactccggggagcgcaaggagatccgtccggtcaccatcgcgacgtaccaggtgatcacc
cgcaagaccaagggcgagtaccgccacctcgagctgttcgactcccgcgactggggcctg
gtgatctacgacgaggtccacctgctgccggccccggtgttccggatgacggcggacctg
cagagccggcggcgcctggggctcaccgccaccctggtgcgcgaggacggccgcgagggc
gacgtgttcagcctcatcgggcccaagcgctacgacgccccgtggaaggacatcgaggcc
cagggctggatcgccccggcggactgcgtcgaggtgcgggtgaccctcaccgacgccgag
cgcctggcctacgccacggccgagccggaggagcgctacaagctgtgctccaccgcgcgc
accaagatgccggtggtcaaggcgatcctggagaagcacaagggtgcgccgaccctggtc
atcggggcctacctcgaccagctgggcgagctcggggaggccttggacgccccgatcatc
cagggctccacgaccaacaaggagcgcgagaagctgttcgacgcgttccgccggggggag
atcagggtgctcgtggtctccaaggtcgcgaacttctcgatcgacctgcccgaggcctcc
gtggcggtgcaggtcagcggcacgttcggctcgcgccaggaggaggcgcagcggctcgga
cggctgctgcggcccaagcacgacggcggacaggcgcacttctactccgtggtcgcgcgg
gacacgctggacgccgactacgccgcgcaccggcagcgcttcctggccgagcagggctac
gcctaccggatcaccgacgccgacgacatcctcggcccgccgatccccggcaccactccc
tga

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