Rhodococcus antarcticus: RHODO2019_14345
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Entry
RHODO2019_14345 CDS
T09186
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHODO2019_14345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rant03019
]
RHODO2019_14345
03009 Ribosome biogenesis [BR:
rant03009
]
RHODO2019_14345
Enzymes [BR:
rant01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHODO2019_14345
Messenger RNA biogenesis [BR:
rant03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHODO2019_14345
Ribosome biogenesis [BR:
rant03009
]
Prokaryotic type
rRNA helicases
RHODO2019_14345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
HEM4
UvrA_inter
CMS1
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UZJ24321
UniProt:
A0ABY6NYW1
LinkDB
All DBs
Position
2939157..2940863
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AA seq
568 aa
AA seq
DB search
MSTPEQDPQQTFADLGIDERVLRALNDVGYESPSPIQAATIPPLLAGRHVVGLAQTGTGK
TAAFAVPVLSRIDVTQRTTQALVLAPTRELAIQVAEAFVKYAKHLPGLHVLPIYGGQAYG
GQLAGLRRGAHVVVGTPGRVIDHLSKGTLDLTQLRFLVLDEADEMLNMGFAEDVETILAD
TPADKQVALFSATMPNQIRRISKKYLTDAAEITITSKTMTAAATRQRYLQVSYPRKLDAL
TRILEVEDFDAMIIFVRTKQVTEDLAEKLRARGFNAAAINGDVAQTQRERTIGQLKSGAI
DILVATDVAARGLDVERISHVVNFDIPTDSESYVHRIGRTGRAGREGDAVLFVTPRERHL
LSSIERATRQPITEMQLPTVDDVNTQRVAKFADSITANLASDQLPLFRRLIDDYVREHDV
PEGDVAAALAVLNQDGPLLLKPEPPAPPRRERTERPAGDRPDRPVRERVERTGRKEPTGP
MATYRISVGRRHKVQPGAIVGAIANEGGLGRGDFGHIDIQADHSLVELPADLSADTLGKL
ARTRISGKLIELTKQDGPSPNRTARPRD
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgagcacccctgagcaggacccgcagcagaccttcgccgacctcggcatcgacgagcgg
gtgctccgcgcgctgaacgacgtgggctacgagagcccgtcgcccatccaggcggccacc
atcccgccgctgctggccggccggcacgtggtggggctggcccagaccggcaccggcaag
accgccgcgttcgccgtcccggtgctctcccggatcgacgtcacccagcggaccacccag
gccctggtgctcgcgcccacccgcgagctcgcgatccaggtggccgaggccttcgtcaag
tacgccaagcacctgcccgggctgcacgtgctgcccatctacggcggccaggcctacggc
gggcagctcgcgggcctgcgccggggcgcgcacgtcgtggtcgggaccccgggccgggtc
atcgaccacctctccaagggcaccctcgacctgacccagctgcgcttcctggtgctcgac
gaggccgacgagatgctgaacatgggcttcgccgaggacgtcgagaccatcctggccgac
accccggccgacaagcaggtggcgctgttctcggccaccatgcccaaccagatccggcgc
atctccaagaagtacctgaccgacgccgccgagatcaccatcaccagcaagacgatgacg
gctgcggccacccggcagcgctacctccaggtctcctacccccgcaagctcgacgcgctg
acccgcatcctcgaggtcgaggacttcgacgcgatgattatcttcgtccggacgaagcag
gtcaccgaggacctcgcggagaagctgcgcgcccgcgggttcaacgccgccgccatcaac
ggcgacgtcgcccagacccagcgcgagcgcaccatcggccagctgaagtccggggcgatc
gacatcctggtcgcgaccgacgtcgccgcccgcgggctcgacgtggagcggatcagccac
gtcgtgaacttcgacatccccaccgactccgagtcctacgtgcaccgcatcggccgcacc
gggcgggccgggcgcgagggcgacgccgtgctcttcgtgaccccccgcgagcgtcacctg
ctctcctcgatcgagcgcgccacccgccagcccatcaccgagatgcagctgccgacggtg
gacgacgtcaacacccagcgcgtggccaagttcgccgactccatcaccgcgaacctggcc
tccgaccagctgcctctgttccgccggctcatcgacgactacgtccgcgagcacgacgtg
cccgagggcgacgtggcggccgcgctggccgtgctcaaccaggacgggcccctgctgctc
aagcccgagccgcccgccccgccgcgccgcgagcgcaccgagcgcccggccggcgaccgc
cccgaccgtcccgtgcgcgagcgggtcgagcggaccggccgcaaggagcccacgggcccc
atggccacctaccggatcagcgtcgggcgccggcacaaggtgcagccgggtgcgatcgtc
ggggccatcgccaacgagggcggcctggggcgcggggacttcgggcacatcgacatccag
gccgaccacagcctcgtcgagctgcccgccgacctctccgcggacaccctcggcaagctg
gcccgcacccgcatctccggcaagctcatcgagctcaccaagcaggacggcccgtcgccg
aaccgcacggctcgcccccgcgactga
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