Rhodococcus antarcticus: RHODO2019_15975
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Entry
RHODO2019_15975 CDS
T09186
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rant
Rhodococcus antarcticus
Pathway
rant03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rant00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHODO2019_15975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rant03400
]
RHODO2019_15975
Enzymes [BR:
rant01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RHODO2019_15975
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RHODO2019_15975
DNA repair and recombination proteins [BR:
rant03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RHODO2019_15975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Ribosomal_S13
Zn_ribbon_TFIIB
DUF7577
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
UZJ24601
LinkDB
All DBs
Position
complement(3275185..3276063)
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AA seq
292 aa
AA seq
DB search
MPELPEVEALAHHLREHAVGLPVGRVDVATLTALKTFDPPVTALVGTTVTGSRRLGKHLD
LECTAPDGTVLHLVVHLMRAGWLRWSESLSAVPPRPGKGPLALRVHLGTPPGAPGFDLTE
AGTQRRLGVWVVRDPADVPGVAKLGPDALSLGLAELAALLGGRAERVKTVLTDQSVLAGV
GNAYSDEILHTARLSPFATTGKLDADQLERLHTALVDVLASAVDRSVGQGAASLKGEKRS
GLRVHARTGLPCPVCGDTVREVSYASKSFQYCPTCQTGGKPLADRRMSRLLR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgagctccccgaggtcgaagccctcgcccaccacctgcgcgagcacgcggtgggt
ctgccggtcggccgcgtcgacgtcgcgacgctcacggcgctgaagaccttcgaccccccg
gtgacggcgctggtggggaccaccgtcaccggctcgcgccggctcggcaagcacctcgac
ctcgagtgcaccgcccccgacgggaccgtgctgcacctggtggtgcacctcatgcgggcg
gggtggctgcgctggtcggagtcgctgtccgccgtgccccccaggcccgggaagggaccg
ctcgccctgcgggtgcacctcggcacaccgcccggcgcccccggcttcgacctgaccgag
gcgggcacgcagcgccggctgggggtgtgggtggtccgcgacccggccgacgtgcccggg
gtggccaagctcggtccggacgcgctctccctgggtctggccgagctggccgcgctgctc
ggcgggcgcgcggagcgggtgaagaccgtgctgaccgaccagtcggtgctggccggggtg
ggcaacgcctactccgacgagatcctgcacaccgcgaggctgtcgccgttcgccaccacc
ggcaagctggacgccgaccagctcgagcggctgcacaccgcgctggtcgacgtgctcgcc
tcggcggtggaccggtcggtgggccagggagcggccagcctcaagggtgagaagcgctcc
ggcttgcgggtgcacgcccgcaccgggctgccgtgcccggtgtgcggggacaccgttcgc
gaggtgtcctacgccagcaagagcttccagtactgccccacctgccagaccggtggaaag
ccgctggccgatcggcggatgagccgcctgctgcgctga
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