Raoultella sp. X13: DSD31_02985
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Entry
DSD31_02985 CDS
T05540
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rao
Raoultella sp. X13
Pathway
rao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSD31_02985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rao03019
]
DSD31_02985
03009 Ribosome biogenesis [BR:
rao03009
]
DSD31_02985
Enzymes [BR:
rao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSD31_02985
Messenger RNA biogenesis [BR:
rao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSD31_02985
Ribosome biogenesis [BR:
rao03009
]
Prokaryotic type
rRNA helicases
DSD31_02985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AXC28495
LinkDB
All DBs
Position
600809..602776
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AA seq
655 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
IETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRFERRGDRNDRGPRGDRPERSGE
DRPKRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRPDRGGERRGGGERREGGRAFGGERREG
GRNFGGGERREGGRGDGRRFSGERRDGARAPRRDDAAAAPRRDDSAGRRRFGGDA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcccatccttgaagcg
cttaacgatctgggttacgaaaaaccatctccgatccaggctgagtgcattccgcatctt
ctgggcggccgcgacgttctgggtatggcccagacgggtagcggtaaaaccgcagcgttc
tctttaccgctgctgaacaatcttgatcctgagctgaaagcaccgcaaattctggtgctg
gcgccgacccgcgaactggcggtacaggtcgctgaagcaatgacggacttctctaaacat
atgcgcggcgtaaacgtggtagccctttacggcggccagcgttatgacgtgcagctgcgt
gctctgcgccagggaccacaaatcgttgtgggtaccccgggtcgtctgctggaccacctg
aagcgcggtactcttgatctctctaaactgagcggtctggtactggatgaagctgacgaa
atgttgcgtatgggcttcatcgaagacgtagaaacgattatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccggaagcgatccgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcatccagtccagcgtcacgactcgcccggacatc
agccagagctactggactgcttacggtatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaatgcgaccctggaa
gtggctgaagcgctggagcgtagcggctacaacagcgccgcgctgaacggcgacatgaac
caggcgctgcgtgagcagactctggagcgtctgaaagatggtcgtctggatatcctgatt
gcgaccgacgttgcggctcgtggcctcgacgttgagcgtatcagcctggttgttaactat
gatatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgtgaacgccgcctgctgcgtaacatc
gaacgcaccatgaagctgacgattccggaagtagaactgccgaacgcagaactgctgggc
aaacgccgcctggaaaaatttgccgctaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgctgaaggtgaagagctggat
atcgaaactctggccgcagctctgctgaaaatggctcagggcgaacgtccgctgattctg
ccgccggatgcaccgatgcgtcctaagcgtgaattccgcgaccgtgacgatcgtttcgag
cgccgtggcgaccgcaacgaccgtggcccgcgtggcgaccgtccggagcgtagcggtgaa
gatcgtcctaagcgcgaacgtcgtgacgtgggcgatatggagctgtatcgcattgaagtg
ggccgcgatgatggcgttgaagttcgtcatattgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacatcaagctgttcggtacccactccacgatcgaactg
ccgaaaggcatgccgggcgaagttctgcagcacttcactcgtactcgcatcctgaacaag
ccgatgaacatgcagctgctgggcgatgctcagccgcgtccggaccgtggcggcgaacgt
cgtggcggtggtgagcgccgtgaaggcggtcgcgcattcggtggcgaacgtcgtgaaggc
ggccgcaacttcggtggtggcgagcgtcgcgaaggcggccgtggtgatggtcgtcgtttc
agcggcgaacgtcgtgacggtgctcgtgctccgcgtcgtgatgatgccgctgcggctccg
cgccgtgatgattccgctggccgtcgtcgtttcggtggcgatgcgtaa
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