Raoultella sp. X13: DSD31_04365
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Entry
DSD31_04365 CDS
T05540
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rao
Raoultella sp. X13
Pathway
rao03410
Base excision repair
rao03430
Mismatch repair
rao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSD31_04365
03430 Mismatch repair
DSD31_04365
03440 Homologous recombination
DSD31_04365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rao03400
]
DSD31_04365
DNA repair and recombination proteins [BR:
rao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSD31_04365
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSD31_04365
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSD31_04365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
PEP-utilizers
Motif
Other DBs
NCBI-ProteinID:
AXC28754
LinkDB
All DBs
Position
880975..882708
Genome browser
AA seq
577 aa
AA seq
DB search
MKQQIQLRRREVVEGAELPADLPPLLQRLYASRGVLHAQELERSVKGMLPWTQLNGIEKA
VEMLYDAFRQERHIVVVGDFDADGATSTALSVLALRALGYSNVSYLVPNRFEDGYGLSPE
VVDQAHARGAQMIMTVDNGISSHAGVDRAHALGIPVVVTDHHLPGETLPAAEAIVNPNLR
DCDFPSKSLAGVGVAFYLMLALRTFLRDKNWFEERGITPPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNVGEARMLANELDALNQTRKEIEQGMQAEALTLCQQLERSGDTLPGGLAM
YHPQWHQGVVGILASRIKERFHRPVIAFAPTGDGLLKGSGRSIQGLHMRDALERLDTLHP
GLILKFGGHAMAAGLSLEEARFEEFQLRFGELVTEWLDPALLQGEVISDGPLETAEMSME
VAHLLREAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTS
IWPDNGVREVTLAYKLDINEFRGNRSLQLIIDHLWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagatacaactacgccgccgtgaggtggttgaaggggctgagctccccgcc
gacctgccgccgctgctgcagcggctgtacgccagccgcggcgtcctgcatgcccaggag
ctcgaacgcagcgtcaaaggcatgctgccgtggacgcagctgaacggcatcgaaaaagcc
gttgagatgctctacgacgcattcaggcaagagcggcatatcgtcgtggtcggtgatttt
gacgccgatggcgccaccagtaccgcgctgagcgtgctggcgctgcgcgcgctgggctac
agcaatgtctcctatctggtgccaaatcgttttgaagatggctacgggttaagccccgaa
gtagtcgatcaggcccacgcccgcggggcgcagatgattatgaccgtggataacggcatc
tcttcccatgccggcgtcgatcgtgcccacgcattggggatcccggtggtcgtgaccgat
caccatctaccgggtgagacgctgccggcagcggaagccattgtgaaccccaatctgcgc
gactgcgatttcccctcgaaatcgctggccggcgtcggggtagcgttctatttgatgctg
gcgctgcgcacgttcctgcgcgataaaaactggtttgaagaacggggcatcacgccgccg
aatcttgccgaactgctggatctggtcgcgctcgggacggtggctgacgttgtgccgctg
gatgccaataaccgcattctcacctggcaagggctgagccgtatccgtgccggtaagtgc
cgtccggggatcaaagcgctgctggagattgccaaccgcgatccgcaaaagctggccgcc
agcgacctggggtttgccctgggaccgcggctgaatgcggcaggccggctggatgatatg
tcggtcggcgtggcgctgctgttgtgtgataacgtcggcgaagcgcggatgctggctaat
gaactggatgcgctgaaccagacgcgcaaagagattgagcaagggatgcaggcggaggcg
ctcacgctgtgccagcagctggaacgcagcggcgacacgctgcccggggggctggcgatg
tatcatccgcagtggcaccagggcgtggtggggattctggcgtcacggattaaagagcgt
ttccatcgcccggttatcgccttcgccccaaccggcgacgggctgttaaaaggctccggg
cgctctatccaggggttgcacatgcgcgatgcgcttgagcgccttgatacgctgcatccg
gggctgattctcaagttcggcggccatgcgatggcggcggggctgtcgctggaagaggcg
cgttttgaggagtttcagctgcgtttcggcgaactggtcaccgagtggctggatccggcg
ctgttgcagggagaagtgatctctgacggcccgctggaaacggctgagatgagcatggaa
gttgcgcatctgcttcgtgaggcgggaccctggggacagatgttcccggagccgctgttt
gacggtcgtttccgcctgttacagcagcgcctggtgggcgagcgacatcttaaagtgatg
gtcgaaccggttggcggcggcccgctgctggacgggattgccttcaacgttgatacttcg
atttggccggataacggcgtacgcgaagtcactctggcctataagctcgatattaatgag
ttccgaggcaaccgcagcctgcagcttatcattgaccatctctggccggtctga
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