Raoultella sp. X13: DSD31_14090
Help
Entry
DSD31_14090 CDS
T05540
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rao
Raoultella sp. X13
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rao03019
]
DSD31_14090
Enzymes [BR:
rao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DSD31_14090
Messenger RNA biogenesis [BR:
rao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DSD31_14090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
ResIII
NTPase_1
AAA_16
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AXC32748
LinkDB
All DBs
Position
complement(2969191..2973093)
Genome browser
AA seq
1300 aa
AA seq
DB search
MTEQQKFTFSQLFQRLDGLMLRDKSRFSRRLHGVKKVKNPEAQQAILQEMAQEIEQAAGR
VLLREASRPTITYPENLPVSQKKDEILQAVRDHQVVIVAGETGSGKTTQLPKICMELGRG
VKGLIGHTQPRRLAARTVANRIAEELQSEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKIIITSATIDPERFSRH
FNNAPIIEVSGRTYPVEVRYRPIVEDADDTERDQLQAIFDAVDELGRESPGDILIFMSGE
REIRDTADALNKLNLRHTEVLPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEDDFLSR
PEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQ
QTAYKLTPMGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQA
SDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNQFRRQCRTDFLNYLRVREWQDIYTQ
LRQVVKELGLPINSEPAEYREIHTALLTGLLSHIGMKDNDKQEFTGARNARFSIFPGSGL
FKKPPKWTMVAELVETSRLWGRIAARIDPEWIEPVAQHLLKRSYSEPHWERAQGAVMARE
KVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRDNLRLRTEIEELE
HKSRRRDILVDDDTLFDFYDQRISHDVISARHFDKWWKAASRETPDLLNFEKSMLIKEGA
EQVSKLDYPNFWHQGNLKLRLTYQFEPGADADGVTVHIPLPLLNQVEEAGFEWQIPGLRR
ELIIALIKSLPKPVRRNFVPAPNYAEAFLGRATPLELPLLDSLERELRRMSGVTIDREAW
QWEQVPDHLKITFRVVDDKNKKLAEGRSLQDLKEALKGKVQETLSAVADDGIEQSGLHIW
SFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWQGLRRLLLLNIPS
PIKYLHEKLPNKAKLGLYFNPYGKVLDLIDDCISCGVDKLIDEAGGPVWREEDFARLHDK
VRAELNETVVEIAKQVEQILTAVFNINKRLKGRVDMSMALGLSDIKAQMGGLVYRGFVTG
NGFRRLGDTLRYLQAIEKRLEKMAIDPHRDRAQMLKVESIQQAWQQWLNKLPPGRRGDTD
VQEIRWMIEELRVSFFAQQLGTPYPISDKRVLQAMEQIVA
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacaacaaaagttcaccttctctcagctattccaacggcttgatggcctgatg
ctgcgtgataagtcacgcttttcccgtcgcctgcatggcgtgaagaaggttaaaaatcct
gaagcccagcaggccattcttcaggagatggcgcaggagatcgaacaagctgcagggaga
gtcctgctgcgtgaagcgtcgcgtccgacgattacttacccggaaaatctaccggtcagc
cagaaaaaagatgagattttgcaggcggttcgcgaccatcaggtggtcattgtggcgggg
gagaccggctccggtaaaaccacccagctgccgaaaatctgcatggagctggggcgcggg
gtgaaagggctgattggccatacgcagccgcgtcgtctggcggcgcgcaccgtggccaac
cgtattgccgaagagctgcaaagcgagccgggcggctgcatcggctataaggtccgtttt
agcgaccacgttagcgacaacaccatggtcaagctgatgaccgacggtattctgctggcg
gaaatccagcaggatcgactgttgatgcagtatgacaccatcatcatcgatgaagcgcac
gaacgtagcctcaacatcgacttcctgctcggctatttacgggaactgctgccgcgtcgc
ccggacctgaaaattatcattacttcggcaaccatcgacccggaacgattttcgcgccac
tttaacaacgcgccgattatcgaagtctccgggcgaacttacccggtggaggtgcgctat
cggccaatcgttgaagatgccgacgacaccgaacgcgatcagctgcaggcgatcttcgat
gccgttgatgaactgggacgtgaaagtcccggcgatatcctgatctttatgagcggcgag
cgcgaaattcgcgataccgccgatgcgctcaataagctcaatctgcgccataccgaagtg
ctaccgctctatgcgcgcttatcgaacagcgagcagaaccgcgtcttccagtcgcacagc
gggcggcggattgtgctggcgaccaacgtcgccgaaacctcgctgacggtgccgggcatt
aagtatgttatcgatccgggcaccgcgcgcatcagccgctacagctaccggaccaaggtg
cagcgtctgccgattgagccggtctctcaggcctctgctaaccagcgtaaagggcgctgc
ggccgtgtttccgaagggatctgtattcgtctttattccgaagacgatttcctctcgcgc
ccggaatttaccgacccggaaattctgcgtactaacctggcgtcggtgattctgcaaatg
accgcgctgggcctcggagatattgccgccttcccgttcgtcgaagcgccggataagcgc
aatatccaggacggcgtgcgtctgcttgaggagctgggggcgattaccaccgacgagcag
cagaccgcctataagctgacgccgatgggccgtcagctcagccagctgccggttgacccg
cgcctggcgcggatggtgctggaagcgcaaaaacatggctgcgtgcgtgaagcgatgatc
atcacctcggcgctgtcgattcaggacccgcgcgaacgcccgatggacaagcagcaggcc
tccgatgagaaacatcgccgcttccacgataaagagtccgacttcctggcgtttgttaac
ctgtggaactaccttggcgagcagcaaaaagcgctctcctcgaaccagttccgtcgccag
tgccgtaccgattttctcaactatctgcgggtgcgcgaatggcaggatatctacacccag
ctgcgccaggtggtgaaagagctggggctgccgattaacagcgagccggcggagtatcgc
gaaatccataccgcgctgctgaccggtctgctgtcgcacatcgggatgaaagataacgat
aagcaggaatttaccggcgcgcgtaatgcgcgcttctctatcttcccgggctccggtctg
ttcaagaaaccgccgaagtggacgatggttgccgaactggtggaaaccagccgtctgtgg
ggacggattgccgcgcgcatcgacccggaatggatagagccggtggcgcagcacctgctg
aaacgctcatacagcgaaccgcactgggagcgggcgcagggggcggtgatggcgagggag
aaagtgaccgtttacggtctgccgatcgtcgccgcccgcaaagtgaactatagccagatc
gacccggcgttgtgccgcgagctgtttatccgccacgcgctggtggagggggactggcag
acgcgtcacgccttcttccgcgacaacctcaggctgcgtacggaaatcgaagagctggag
cataaatcgcgccgccgcgacattctggtggatgacgatacgctgttcgatttctacgac
cagcgtatcagccacgatgtgatctccgcgcgccacttcgataagtggtggaaagcggcc
agtcgcgaaacgccggatctgctcaacttcgaaaagagtatgttgatcaaagagggggcg
gaacaggtcagtaagcttgactatccgaacttctggcatcagggcaacctcaagctgcgg
ttgacctatcagtttgaaccgggcgccgatgccgacggggtgacggtacatattccgctg
ccgttgctcaaccaggtggaagaggccgggttcgagtggcagattcccggcctgcgtcgc
gagctgattatcgcgctgattaaatcgctgccgaaaccggtgcgccgtaatttcgtgccg
gcgccgaactacgccgaggcgtttttaggccgcgcgacgccgctggagctgccgctgctc
gattcgctggagcgcgagctgcggcggatgagcggcgtgaccatcgaccgcgaggcctgg
cagtgggaacaggtgcccgatcatctgaaaatcaccttccgggtggtggatgacaagaac
aaaaagctggcggaagggcgttcgctgcaggatttaaaagaggctttgaagggcaaagtg
caggagacgctttctgccgttgccgacgatggcattgagcagagcgggctgcatatctgg
agtttcggtcagctgccggagagctacgagcaaaaacgcggcaactataaggtgaaagcc
tggccggcgctggtggatgaacgcgacagcgtggcgattaagctgtttgataatccgctg
gagcagcagcaggcgatgtggcaggggctgcgccgtctgctgctgctgaatatcccgtcg
ccgattaagtatctgcacgagaaactgccgaataaagccaagctggggctctattttaac
ccttacggcaaagtgctggatctgattgatgactgtatctcctgtggcgtcgataaactt
atcgatgaggcgggcggcccggtgtggcgcgaggaggatttcgccagactgcacgataag
gtgcgcgccgaactgaatgagacggtggtggagatagccaaacaggttgaacagattctg
accgcggtgtttaacatcaataagcggctgaaagggcgcgtcgacatgagcatggcgctg
gggctgtcggatattaaggcgcagatgggcgggctggtctatcgcggcttcgtgaccggc
aacggtttccgccggctgggggatactctgcgctatctgcaggcgattgaaaaacggctg
gagaaaatggccatcgatccgcatcgcgaccgggcgcagatgcttaaggtggagagtatc
cagcaggcctggcagcagtggctgaataagctgccgccggggcgtcgtggggatacggat
gtgcaggagattcgctggatgattgaggagctacgcgtcagcttcttcgcccagcagctc
ggaacgccgtatcccatctccgacaagcgggtgctgcaggcgatggagcagatcgtcgcc
tga
DBGET
integrated database retrieval system
