Raoultella sp. X13: DSD31_20860
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Entry
DSD31_20860 CDS
T05540
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rao
Raoultella sp. X13
Pathway
rao03030
DNA replication
rao03430
Mismatch repair
rao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSD31_20860
03430 Mismatch repair
DSD31_20860
03440 Homologous recombination
DSD31_20860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rao03032
]
DSD31_20860
03400 DNA repair and recombination proteins [BR:
rao03400
]
DSD31_20860
Enzymes [BR:
rao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DSD31_20860
DNA replication proteins [BR:
rao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DSD31_20860
DNA repair and recombination proteins [BR:
rao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DSD31_20860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AXC31746
UniProt:
A0A808Y4M4
LinkDB
All DBs
Position
complement(4374448..4377930)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGA
GLKPIVGADFHVQSELMGDEFTELTVLAANNVGYQNLTLLISRAYQRGYGALGPWIDRDW
LAEHQEGLILLSGARKGDVGVSLTRGNMALVDQCLSFYQQHFPDRYYLELIRTGRADEEA
YLHAAVQLAEERGLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDPKRPRKYSPQQYM
RSEDEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDYLVKKSKEGL
EERLAFLFPDPEERLKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKHGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHECLKPVLEPTYGIILYQEQVMQIAQELSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYANCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGVRLKDMHPTDRGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRSLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtccacctgcgggtgcatagcgactattccatgatcgatggg
ctggcaaaaaccgggccgctggtgaaaaaggcggcctcgcttggcatgcctgcgctggcg
atcaccgattttactaacctgtgcggactggtgaagttctacggagcgggacatggcgca
ggcctgaagcctatcgtcggcgcggattttcacgtccagagcgaactgatgggcgatgag
ttcaccgaactcacggttctggcggccaacaatgtgggttatcaaaacctgacgctgctg
atttcacgtgcctatcaacgcggctatggcgcgctggggccgtggattgaccgggactgg
ctggccgaacatcaggaagggctgatcctgctttccggcgcgcgtaaaggcgatgttggc
gtcagcctgacgcgtggcaatatggcgctggtcgatcaatgtctctctttctaccagcag
catttcccggatcgctactatctggagctgatccgcaccggccgcgctgatgaagaggcc
tatttacacgccgccgtgcagctggctgaagaacgcggtttaccggtcgtggcgaccaac
gatgtgcgtttcctggaaaccggtgatttcgatgcgcatgagatccgcgtcgcgatccat
gacggctttaccctggacgatccgaagcgcccgcgcaaatactcgccgcagcaatatatg
cgcagcgaagatgaaatgtgcgagctgttctccgatattccggaggcgctggaaaatacc
gtcgaaatcgccaagcgctgcaacgttaccgtgcgtcttggcgaatacttcctgccgcag
ttcccgaccggggatatgacgacggaagattatctggttaaaaaatcaaaagagggcctg
gaagagcgtctggctttcctgttccctgatcctgaagagcggcttaaacgccgacctgaa
tacgatgaacgactggatatcgaacttcaggtaattaaccagatgggcttccccggctac
ttcctgatcgtcatggagtttatccagtggtccaaggataacggcgtaccggtagggccg
ggacgtggttccggcgccgggtcgttagtcgcctacgccttaaaaatcaccgatctggat
ccgctggaattcgatctgctgtttgaacgtttcctgaaccctgaacgtgtatcgatgccc
gactttgacgtcgacttctgcatggagaagcgcgatcaggttatcgagcacgtggcggag
atgtacggtcgcgacgcggtatcgcagatcatcacctttggtacgatggcagcgaaagcg
gttattcgtgacgtgggccgcgtgctcggccacccgtacgggttcgtggatcggatctca
aaactggtgccgcccgacccgggtatgacgctggcgaaagcgtttgaggccgagccgcag
ctgccggagatctacgaagctgacgaagaggtcagagcgctgatcgacatggcgcgtaag
ctggaaggcgtcacgcgtaacgccggtaagcatgcggggggcgtggttatcgccccgacc
aaaattaccgacttcgccccgctatattgcgatgaagccggtctccatccggtcacccag
tttgataagaacgacgtcgaatacgccgggctggtgaagttcgacttccttggcctgcgt
acgctgaccatcatcaactgggcgctggagatgatcaacaagcggcgggcgaaacacggc
gagccgccgctggatatcgcggcgatcccgctggacgataagaaaagcttcgatatgctg
caacgctcggaaaccaccgcggttttccagcttgaatcgcgcggcatgaaagatctgatt
aaacgcctgcagcccgactgcttcgaagatatgatcgcgctggtggccctgttccgtccg
gggccgctgcaatcggggatggtagataactttatcgaccgtaaacacggccgcgaagag
atctcttacccggacgtgcagtggcagcatgagtgtctgaaaccggtgcttgagccgacg
tatggcattatcctgtatcaggaacaggtcatgcagattgcccaggagctctcaggctat
accctcggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaagcagcgcggtacctttgaagaaggggccaggaaaaacggcattgacggcgagctg
gcgatcaaaatctttgacctggtggagaaattcgccggctacggatttaacaaatcgcac
tcggcagcctatgcactggtctcctaccagacgctgtggctgaaagcgcactatccggcc
gagtttatggcggcggtgatgaccgcggatatggataacaccgaaaaagtggtggggctg
gtcgacgagtgctggcggatgggcctgaaaatcctgccgccggatattaactccggtctg
taccatttccacgtgaatgacgacggtgaaatcgtctatggtatcggcgcgattaaaggg
gtcggcgaaggcccgatcgaagccattattgaagcgcgtaacaacggtggttatttccgc
gagttgttcgatctttgcgcccgcaccgataccaaaaagctgaaccgccgggtgctggaa
aaactgattatgtccggggcgtttgaccgtctcgggccgcatcgcgcggcattaatgaat
tcgctgggcgatgcgctgaaggccgccgatcagcatgcgaaagccgaagcgattggccag
gcggatatgttcggggtgctggcggaagagccggagcaaatcgagcaatcctatgccaac
tgccagccgtggccggagcaggtggtgctggatggtgaaagggagaccctggggctgtac
ctgacgggccatcctatcaaccagtatttgaaagagattgagcgctatgttggcggcgtg
agactcaaagacatgcatccgaccgatcgtggtaaagtcaccacggcggcggggctcgtt
attgctgcgcgggtaatggtcaccaagcgcggcaatcgtatcggtatctgtacgttggat
gaccgttccgggcgtctggaggtgatgttatttaccgacgcgctggataaatatcagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgtgaagtcatggacattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgttcgggaaccattccagtacacctctattatcag
agggcggatgcgcgcgcgcggctgcgttttggcgcaacatggcgcgtctctccgagcgat
cgtttactcaacgatctgcgtagccttatcggctcggagcaggtggaactggagtttgac
taa
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