Raoultella sp. X13: DSD31_24535
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Entry
DSD31_24535 CDS
T05540
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rao
Raoultella sp. X13
Pathway
rao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSD31_24535 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rao03021
]
DSD31_24535 (rpoC)
03400 DNA repair and recombination proteins [BR:
rao03400
]
DSD31_24535 (rpoC)
Enzymes [BR:
rao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSD31_24535 (rpoC)
Transcription machinery [BR:
rao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSD31_24535 (rpoC)
DNA repair and recombination proteins [BR:
rao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSD31_24535 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AXC32412
LinkDB
All DBs
Position
complement(5141348..5145571)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERNQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDENGQFVAKTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGVEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEHWCDLLEENSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNAKSVVNSAGKLVVTSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANW
DPHTMPVISEVSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISAGDALARIPQESSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYITNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRDLEANGKVAATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQPA
APQVSVEEASANLAELLNAGLGGSDND
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcatggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtacgttcaaaccagagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggtgttatctgtgagaagtgcggcgttgaagtgacccagaccaaagtgcgtcgtgag
cgcatgggccacatcgaactggcctctccgaccgcccacatttggttcctgaaatcgctg
ccgtcccgtatcggcctgctgctggatatgccgctgcgcgatatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcgggatgaccaacctggaacgtaatcagatcctg
actgaagagcagtatctggatgcgctggaagagtttggtgacgaattcgatgcgaagatg
ggtgcggaagctattcaggccctgctgaaaagcatggatctggagcaagagtgcgagcag
ctgcgtgaagagctgaacgaaactaactccgaaaccaaacgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggcaacaagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgatgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagcggttgtctgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcggagcgtatttatcgcgccggt
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgaaaac
ggccagttcgttgcgaaaaccagcctgaaagacacgaccgttggccgtgcgattctgtgg
atgatcgtgccgaaaggtctgccgttctctatcgtgaaccaggcgctgggtaagaaagcc
atctctaagatgctgaatacctgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
attgatgacatggtcatcccggagaaaaaacacgagatcatctctgaggcggaagccgaa
gttgctgagatccaggaacagttccagtccggtctggttaccgcgggcgaacgctataac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggcgtcgaagagcagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgacccgtcgtctg
gttgacgttgcccaggatctggttgtcactgaagatgactgtggcaccctggaaggcatc
accatgaccccggttatcgagggtggcgatgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtgaccgctgaagacgttctgaagccgggtaccgcggacattctggttccacgc
aacacgctgctgcacgagcactggtgtgacctgctggaagagaactccgttgactccgtc
aaagtgcgttccgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcattcaggtgaaaaacaagggtagcatcaagctg
tctaacgccaagtcggttgtgaactccgctggcaagctggttgtgacctcgcgtaacacc
gaactgaagctgatcgacgaattcggtcgtactaaagaaagctataaagtgccttacggc
gccgttatggcgaaaggcgatggcgagcaggttgccggcggtgaaaccgtggcaaactgg
gatccgcacaccatgccggttatctctgaagttagtggtttcatccgctttactgacatg
attgacggccagaccattacccgtcagaccgacgaattaaccggtctgtcatccctggtt
gttctggattctgcagaacgtaccgcgggcggtaaagatctgcgtccagcgctgaaaatt
gttgatgcacagggcaacgacgttctgatcccaggtaccgatatgcctgctcagtacttc
ctgccgggcaaagcgattgtccagctggaagatggcgtacagatcagtgcgggtgacgct
ctggcgcgtattcctcaggaatccagcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggctatcctggcggaaatcagc
ggtatcatttccttcggtaaagaaaccaaaggcaaacgtcgtctggttatcactccgtta
gacggcagcgatccgtacgaagagatgattccgaaatggcgtcagctgaacgtgttcgaa
ggtgaacgtgtagaacgtggtgatgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtcttcgtggcgtacacgcggtaacgcgttatatcaccaacgaagtacaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacatcgaagttatcgttcgtcagatg
ctgcgcaaagcgaccatcgaaagcgcaggtagctccgacttcctggaaggcgaacaggtt
gaatactcccgcgtcaagattgctaaccgcgatctggaagcgaacggcaaagtggcggcg
acttactcccgcgacctgctgggtatcaccaaagcgtctctggcaaccgagtcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtcggtcgtctgatcccggcgggt
accggctatgcgtaccaccaggatcgtatgcgccgccgcgccgcgggcgaacagcctgca
gcacctcaggtgagcgtggaagaagcttctgctaacctggcagaactgctgaacgcaggt
ctgggcggttccgacaacgattaa
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integrated database retrieval system
