Raoultella sp. X13: DSD31_24540
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Entry
DSD31_24540 CDS
T05540
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rao
Raoultella sp. X13
Pathway
rao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DSD31_24540 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rao03021
]
DSD31_24540 (rpoB)
03400 DNA repair and recombination proteins [BR:
rao03400
]
DSD31_24540 (rpoB)
Enzymes [BR:
rao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DSD31_24540 (rpoB)
Transcription machinery [BR:
rao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DSD31_24540 (rpoB)
DNA repair and recombination proteins [BR:
rao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DSD31_24540 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AXC32413
LinkDB
All DBs
Position
complement(5145648..5149676)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVVFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDDIKHIEVPVEYIAGKVAAKD
YIDEATGELICPANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFGRIYAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQQQEVAK
LREFIQKAYDLGTDVRQKVDLNTFTDDEVLRLAENLKKGMPIATPVFDGAKESEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccgcag
gttctggacataccttatctcctttccatccagcttgactcgtttcagaagtttatcgag
caagatcctgaagggcagtacggtctggaagcagctttccgttccgtgttcccgattaaa
agctacagcggtaactctgagctgcaatacgtcagctaccgtctgggcgaacctgttttt
gatgttaaagaatgtcagatccgtggcgtgacctactcggcaccgctgcgcgttaaactg
cgtctggtgatctacgagcgtgaagcgccggaaggcaccgttaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgaccgacaacggtacctttgttatcaacggt
actgaacgtgttatcgtttctcagctgcaccgtagcccgggcgtcttctttgactctgac
aaaggtaagactcactcttccggtaaggtcctgtataacgcacgtattattccttaccgc
ggttcctggctggacttcgagttcgatccgaaagacaacctgtttgtccgtatcgaccgt
cgtcgtaagctgccggccaccatcatcctgcgcgcgctgaattacaccactgagcagatc
cttgacctgttcttcgagaaagtggtctttgaaattcgcgacaacaagctgcagatggaa
ctggttccggagcgtctgcgcggtgaaacggcttccttcgacatcgaagcgaacggcaaa
gtctacgtcgagaaagcccgtcgcattaccgctcgccatatccgtcagctggaaaaagac
gatatcaagcatatcgaagttccggtggaatatattgcgggtaaagttgcggccaaagat
tatatcgatgaagctactggcgaactgatctgcccggcgaacatggagctgagcctggat
ctgctggcgaagctgagccagtccggtcacaagcgcatcgagactctgttcaccaacgat
ctggaccacggtccgtacatttctgaaactgtacgcgtcgacccaactaacgatcgtctg
agcgcgctggttgaaatctaccgcatgatgcgcccgggtgagccgccgactcgtgaagcg
gctgaaagcctgtttgagaacctgttcttctccgaagaccgctacgatctgtctgcggta
ggtcgtatgaagttcaaccgttctctgctgcgtgacgaaatcgaaggttccggtatcctg
agcaaagacgacatcatcgaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgtaggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggatatgatcaacgccaagccgatttctgcg
gcagtgaaagagttctttggttccagccagctgtcacagtttatggaccagaacaacccg
ctgtccgagattacgcacaaacgtcgtatctccgcactcggcccaggcggcctgacccgc
gaacgtgcgggctttgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacgcctgaaggtccgaacatcggtctgatcaactccctgtccgtgtacgcacag
actaacgaatacggcttcctcgagactccgtatcgtaaagtgaccgacggtgttgtgacc
gacgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgctcaggcgaac
tccaacctggatgacgaaggccactttgtagaagacctggttacctgccgtagcaaaggc
gaatccagcttgttcagccgcgatcaggttgactacatggacgtttccacccagcaggtg
gtttctgtcggtgcgtcgctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggcggttccgactctgcgcgctgataagccgctggtg
ggtaccggtatggaacgtgctgttgccgttgactccggtgttactgcagttgctaaacgt
ggcggtaccgtacagtacgtcgatgcatcccgtatcgttatcaaagttaacgaagacgag
atgtacccgggcgaagcaggtatcgacatctataacctgaccaagtacacccgttctaac
cagaacacctgcatcaaccagatgccttgcgtgtccttgggtgagccaattgagcgcggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggctctcggtcagaacatg
cgcgtagcgttcatgccgtggaacggctacaacttcgaagactccatcctcgtctccgag
cgtgtggttcaggaagatcgtttcaccacgattcatattcaggaactggcctgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgatatcccgaacgtgggtgaagct
gcgctctctaaactggatgaatccggtatcgtttacatcggtgcagaagtgaccggcggc
gacattctggttggtaaggtcacgccgaaaggtgaaacccagctgacgccagaagagaaa
ctgctgcgtgcgatcttcggcgagaaagcgtctgacgttaaagactcttctctgcgcgta
ccaaacggtgtttccggtactgttatcgacgttcaggtcttcacccgcgatggcgtggaa
aaagacaaacgtgcgctggaaatcgaagagatgcagctgaagcaggccaaaaaagacctg
tctgaagaactgcagatcctcgaagctggcctgtttggtcgtatctacgcggtgctggtt
gccggtggtgttgaagctgagaagctcgacaagctgccgcgcgatcgctggctggaactg
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtacgacgaa
ctgaaacacgagttcgagaaaaaactcgaagcgaaacgccgcaaaatcactcagggcgac
gatctggcaccgggcgtgctgaagattgttaaagtgtatctggccgttaaacgtcagatt
cagccgggtgacaaaatggcaggtcgtcacggtaacaagggtgttatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtcgacatcgtactgaacccg
ctgggcgtaccatctcgtatgaacatcggtcagattctggaaacccacctgggtatggct
gcgaaaggtatcggtgagaaaatcaacgcgatgctcaaacagcagcaggaagtcgccaaa
ctgcgcgagttcatccagaaagcgtatgacctgggtaccgatgttcgtcagaaggtcgat
ctgaataccttcaccgatgatgaagttctgcgtcttgctgaaaacctgaaaaaaggtatg
ccgatcgcaacgccggtcttcgacggtgcgaaagagtctgaaatcaaggaactgttacag
ctgggtggcctgccgacttccggtcagatcactctgttcgacggtcgtaccggtgagcaa
ttcgagcgccaggttaccgttggctacatgtacatgctgaaactgaaccacctggttgat
gacaaaatgcatgcgcgttctaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgctggaagct
tatggcgcggcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtcaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggaaccgggcatgccg
gaatccttcaacgtactgttgaaagagattcgctcgctgggcatcaacatcgaactggaa
gacgagtaa
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