Rhodovastum atsumiense: RHOA_0512
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Entry
RHOA_0512 CDS
T08162
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOA_0512 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rap03019
]
RHOA_0512 (recQ)
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_0512 (recQ)
Enzymes [BR:
rap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHOA_0512 (recQ)
Messenger RNA biogenesis [BR:
rap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHOA_0512 (recQ)
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHOA_0512 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
CAH2599094
LinkDB
All DBs
Position
RHOA:complement(556310..558136)
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AA seq
608 aa
AA seq
DB search
MERSGSPLDVLRRVFGYPGFRGLQEAAVRHVMGGGDALVLMPTGGGKSLCYQLPALCRPG
TAIVVSPLIALMDDQVAALRQLGIAAGALHSELDPDEQRRVGRALDAGQLDLVYVSPERL
LSPGTLERLQRRSLSLIAIDEAHCVSQWGHEFRPEYRALADLAARFPGVPRIALTATADP
RTRTDVLEALAMQGARVFVASFHRPNLQVACEAKRAESAQLLELLHRHPDEAGIVYCGSR
AKTERMAAWLQGKGVAAVVFHAGLPAEAKRAALARFRSGEPVVVVATIAFGMGIDRPDVR
FVAHLDMPDSPEAYYQQIGRAGRDGDPSETLLLYGGEDIARARHWLTQSAAPEAQKRVMH
DRLEAMIALTETAGCRTRALLACFGEDLGADCGHCDNCISPVGTFDGTVEAQKLLSAVYR
TGQRFGAGHVINVLLGKASEMVLQRQHDRLPTFGIGADRTRNFWRGVIRQLVARGALQVE
SGELPTLSLVTEKARPILRGEERVMLREDILIERDRRRGSPERRSRVRPGMAEEPGGTLF
DALRLWRSGEARAQGVPPYVIFHDSVLREIAAVRPASLDELGEVKGVGASKLTRYGARVL
GVVRDTPV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
gtggaacggtccggctcgccgctcgacgtattgcgccgggtgttcggttatcccggcttt
cgtggcctgcaggaagccgcggtgcggcatgtcatgggcggcggcgacgcgctggtgctg
atgccgaccggcggcggcaagagcctgtgctaccagttgccggcgctgtgccggcccggc
accgccatcgtggtcagcccgctgatcgcgctgatggacgaccaggtggcggcgctgcgc
cagctcggcattgccgccggcgccctgcattccgagctcgatccggacgaacagcgccgg
gtcggccgtgcgctcgatgccgggcagcttgatctggtctatgtttcgcccgaacgcctg
ctcagccccggcacgctggagcggctgcagcggcgcagcctgtcgctgatcgccatcgac
gaggcgcattgcgtcagccagtggggccacgagttccggccggaataccgggcgctggcg
gatctggctgcgcgctttcccggcgtgccgcgcatcgccctgaccgccaccgccgatccg
cgcacgcgcacggacgtgctggaggcgctggcgatgcagggcgcgcgcgtcttcgtcgcc
agctttcaccgtcccaacctgcaggttgcctgcgaggccaagcgcgccgagagcgcccag
ttgctggaactgctgcaccggcacccggacgaggccggcatcgtctattgcggcagccgg
gccaagaccgagcgcatggccgcgtggctgcagggcaagggggtggccgcggtcgtcttc
catgccggcctgccggccgaggcgaagcgcgcggcactggcgcggttccgctcgggtgag
ccggtggtggtggtggcgaccatcgccttcggcatgggcatcgaccggccggatgtgcgc
ttcgtcgcgcatctggacatgccggacagcccggaagcctattaccagcagatcggccgc
gccggccgcgacggcgacccgtccgagaccctgctgctgtacggcggcgaggacatcgcc
cgggcccgtcactggctgacgcaatccgcggcgccggaggcgcagaagcgggtgatgcac
gaccggctggaggcgatgatcgcgctgaccgaaacggccggctgccgcacccgtgcgctg
ctcgcctgcttcggcgaggatctcggcgccgattgcggacattgcgacaactgcatctcc
ccggtcggcaccttcgacggcaccgtggaggcgcagaagctgctctcggcggtctatcgc
accggccagcgtttcggcgccgggcacgtgatcaatgtcctgctcggcaaggcctccgag
atggtgctgcagcgccagcacgaccggctgcccaccttcggcatcggtgccgatcgcacc
cgcaatttctggcgcggcgtgatccgccaactggtcgcgcggggggcgctgcaggttgag
agcggcgagttgccgacgctctccctggtcacggagaaagcgcgcccgatcctgcgcggc
gaggaacgggtgatgctgcgcgaagacatcctgatcgaacgcgaccggcggcgcggttcc
cccgagcgccgcagccgggtgcggccaggcatggccgaggagcccgggggcacgctgttc
gacgccttgcggctctggcgctcgggcgaggcgcgggcacagggcgtgccgccctacgtg
atcttccatgacagcgtgctgcgcgagatcgcggcggtgcggccggcgagcctcgacgaa
ctcggggaggtgaagggcgtgggggccagcaagctcacacgctacggcgcgcgggtgctg
ggcgtggtgcgcgataccccggtctga
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