Rhodovastum atsumiense: RHOA_0906
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Entry
RHOA_0906 CDS
T08162
Symbol
uvrD
Name
(GenBank) putative DNA helicase II homolog
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03420
Nucleotide excision repair
rap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHOA_0906 (uvrD)
03430 Mismatch repair
RHOA_0906 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_0906 (uvrD)
Enzymes [BR:
rap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHOA_0906 (uvrD)
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RHOA_0906 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RHOA_0906 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_25
vATP-synt_AC39
Motif
Other DBs
NCBI-ProteinID:
CAH2599502
LinkDB
All DBs
Position
RHOA:complement(977056..979242)
Genome browser
AA seq
728 aa
AA seq
DB search
MTDYLTRLNPEQREAVETVDGPLLVLAGAGTGKTRVLTTRFAHILLTGRAFPGQVLAVTF
TNKAAREMRERVSAMLGRPAEGLWLGTFHALCARMLRRHAELVGLTSSFNILDADDQLRL
LKQVMEAGRIDTKRWAPPALMAMIQRWKDKGLPPARVTAAEDTDFANGRARALYVAYQER
LRTLNAADFGDLLLHVTEILRGHPEVLAQYHRAFRYILVDEYQDTNLVQYLWLRLLAQGH
RNICCVGDDDQSIYSWRGAEVENILRFEKDFPGARIVRLESNYRSTAPILAAASALIAHN
EDRLGKTLRPGRAEAGGERISIVSLWDSDEEARMVGDRIEKLRRAGDSPAEMAVLVRAGF
QTRAFEERLITLGVPYRVVGGLRFYERQEIRDAIAYMRVLHQPADDLAFERIVNVPRRGL
GEQALRALHEIARGQQVPLSVAASLAAEGGQLRGKARDSVRELLQGFARWREKLEREGHV
VTLATMLDESGYTEMWKQDKSPEAPGRLENLKELVRALADFETLAGFLDHVSLVMENEEN
AEGERVSLMTLHAAKGLEFDTVFLPGWEEGLFPSQRTMDENGAKGLEEERRLAYVGITRA
RRRAIISHAANRRIYANWQSSIPSRFIEELPDSEVERVGSAALQRERRLTAPPAFAGPSP
MVARRPRTIEVWEQPARPARTDAITVGMRVFHQKFGYGTVTRAEDDKLDVAFDKAGAKRI
LDRFVEKA
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactacctcacccgcctcaatcccgagcagcgcgaggccgtggagacggtcgac
gggccgctgctggtgctggccggcgccggcaccggcaagacccgcgtgctgaccacgcgg
ttcgcccatatcctgctgaccgggcgcgcttttcccgggcaggtgctggccgtcaccttc
accaacaaggccgcccgcgagatgcgcgagcgcgtctccgccatgctcggccgccccgcc
gaggggttgtggctcggcaccttccatgccctgtgcgcgcgcatgctgcgccggcacgcc
gaactggtcgggctgacctccagcttcaacatcctcgacgccgacgaccagttgcggctg
ctcaagcaggtgatggaggccgggcgcatcgacaccaagcgctgggcgccgccggccctg
atggcgatgatccagcgctggaaggacaagggcctgccgcccgcccgcgtgaccgcggcc
gaggacaccgatttcgccaatggccgggcccgcgcgctctatgtcgcctaccaggagcgg
ctgcgcacgctgaacgccgccgatttcggcgacctgctgctgcatgtgaccgagatcctg
cgcggccatcccgaggtgctggcgcagtaccaccgggccttccgctacatcctggtcgac
gagtaccaggacaccaatctcgtgcagtatttgtggctgcggctgctggcgcagggccac
cgcaacatctgctgcgtgggggatgacgaccagtcgatctattcctggcgtggcgccgag
gtggagaacatcctccgcttcgagaaggatttccccggcgcccgcatcgtgcggctggaa
agcaattaccgctccaccgcgccgatccttgccgccgcctcggcgctgatcgcccataac
gaggatcgcctcggcaagacgctgcgccccggccgcgccgaggccggcggcgagcgcatc
agcatcgtcagcctgtgggattccgacgaagaggcccgcatggtcggcgaccgcatcgag
aagctgcgccgcgccggcgactcgccggccgagatggcggtgctggtgcgcgcgggcttc
cagacccgcgccttcgaggaacgcctgatcacgctcggcgtgccctatcgcgtcgtgggc
ggcctgcgcttctacgagcgccaggagattcgcgacgccatcgcctatatgcgggtgctg
caccagccggccgacgacctggccttcgagcgcatcgtcaacgtgccgcgccgtggcctc
ggcgagcaggcgctgcgggccctgcacgagatcgcgcgcgggcagcaggtgccgctctcc
gtcgccgcctcgcttgccgccgaggggggccagttgcgcggcaaggcccgcgactcggtg
cgcgagctgctgcagggcttcgcccgctggcgcgagaagctggagcgggaaggccacgtc
gtcacgctcgcgaccatgctggacgagagcggctacactgagatgtggaagcaggacaag
tcgcccgaggcgccgggacggctggagaacttgaaggaactggtccgcgcgctcgccgat
ttcgagacgctcgccggcttcctcgaccatgtctcgctggtgatggagaacgaggagaac
gccgagggcgagcgcgtcagcctgatgacgctgcatgccgccaaggggctggaattcgac
accgtgttcctgccgggctgggaggaagggctgttcccgagccagcgcaccatggacgag
aacggcgccaaggggctcgaggaggagcggcggctcgcctatgtcggcatcacccgcgcc
cgccgccgcgccatcatcagccacgccgccaaccgccgcatctacgccaactggcagagc
agcattcccagccgcttcatcgaggaactgcccgacagcgaggtggagcgggtcggctcg
gcggcgctgcagcgcgaacgccgcctgaccgcgccccccgccttcgccggtccgtccccc
atggtggcccgccgcccgcgcaccatcgaggtctgggaacagcccgcccgcccggcgcgc
accgacgcgatcacggtgggcatgcgcgtcttccaccagaaattcggctacggcacggtg
acccgggcggaggacgacaagcttgatgtcgccttcgacaaggcgggcgccaagcgcatt
ctcgaccgcttcgtcgaaaaggcatga
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integrated database retrieval system
