Rhodovastum atsumiense: RHOA_1216
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Entry
RHOA_1216 CDS
T08162
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rap
Rhodovastum atsumiense
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rap03032
]
RHOA_1216 (topA)
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_1216 (topA)
Enzymes [BR:
rap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RHOA_1216 (topA)
DNA replication proteins [BR:
rap03032
]
Prokaryotic type
DNA Topoisomerases
RHOA_1216 (topA)
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RHOA_1216 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
CAH2599813
LinkDB
All DBs
Position
RHOA:1291139..1293796
Genome browser
AA seq
885 aa
AA seq
DB search
MTDVVVVESPAKAKTINKYLGSKYTVLASLGHVRDLPPKDGSVRPDQDFAMDWEADDRGA
RQVAAIAKALKGASTLYLATDPDREGEAISWHVRAMLDEKRALNGVAVRRITFNEITRNA
IRHAIEHPRDLDLPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICE
REAEIESFRPREYWTVEAVFTTPEGASFTARLTHLDGRKLEQFDLPNEAAGLRAKAAVEA
GSFSVATIERKRVKRNPPPPFTTSTLQQEASRKLGFGAQQTMRLAQQLYEGVDIEGDTVG
LITYMRTDGVQMAREAMLSIREHVQAEYGPTYVPAAPREYTSRAKNAQEAHEAIRPTEIG
RVPQSVAAYLNAEQFRLYELIWKRAVASQMQSAEFDQVSVDAADAKPNGPRLRATGSIMA
FDGFLKLYREDQDDAPGEAGADEEGRMLPPMAERDRLGHDKASAEQHFTQPPPRYSEASL
VKKLEELGIGRPSTYASILSVLQDRKYVRLDRKRFIPEDRGRLVTAFLTSFFERYVDTGF
TAGLEEQLDEISDGKADWRAIMRAFWEEFSRAVEQTRDLKISDVISALDRDLGPHFFPAR
EDGTDPRTCPACNEGRLGLKLGRHGSFIGCSNYPNCQYTRRLAIDSGEDAGDTLKEGMRV
LGPHPDTGEEITVRRGPYGVYVQQGEQVEGSKVKPRRTSLPRGVDGDSITLEQAVALLSL
PRIVGIHPETNEPIEAGLGRFGPYVKMGGVFASLDRDDDVLAVGLNRAVDLLARKLASVR
TLGPHPSDREPVLVRKGRFGPYAQHGNKVATLPRDVAMDDVTLEQAVALLAEKGKLLKPR
GAKARKAAPKKEAAAPEAPKKAAPKKAAAPKKAAAKPKAAARKAG
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgtcgtcgtcgtcgaatcgcctgcgaaggcgaagaccatcaacaagtacctc
ggcagcaaatacaccgtgctggcgagcctggggcatgtacgcgaccttccccccaaggac
ggcagcgtgcgtcccgatcaggacttcgccatggactgggaggccgatgatcgcggcgcc
cggcaggtcgcggccatcgccaaggcactcaagggcgccagcacgctctatctcgccacc
gacccggatcgcgagggcgaggccatctcctggcacgtgcgggcgatgctggacgagaag
cgcgccctgaacggcgtggcggtccgccgcatcaccttcaacgagatcacgcgcaacgcc
atccgccacgcgatcgagcacccgcgcgacctcgacctgccgctgatcgaggcctatctg
gcccgccgcgcgctggactacctggtcggcttcaccctctcgccggtgctctggcgcaag
ctgccgggcagccgcagcgccggacgggtgcagtcggtggcgctgcgcctgatctgcgag
cgcgaagccgagatcgagtcgttccgcccgcgcgagtactggaccgtcgaggcggtgttc
accacccccgagggcgccagcttcaccgcccggctgacccatctggacgggcgcaagctc
gagcagttcgacctgcccaacgaggccgccgggctgcgcgccaaggcggcggtcgaggcc
ggcagcttctcggtcgccacgatcgagcggaagcgggtcaagcgcaacccgcccccgccc
ttcaccacctcgaccctgcagcaggaagcctcgcgcaagctgggctttggcgcgcagcag
acgatgcggctcgcccagcaactgtacgagggcgtcgacatcgagggcgataccgtcggc
ctgatcacgtatatgcgaaccgacggcgtgcagatggcccgcgaggcgatgctgagcatc
cgcgagcatgtgcaggccgagtacggccccacctacgtgccggccgccccgcgcgaatac
accagccgcgccaagaacgcccaggaagcccacgaggcgatccgcccgaccgagatcggc
cgcgtgccgcagagcgtggccgcctacctcaacgccgagcagttccgcctgtatgagctg
atctggaagcgcgccgtcgccagccagatgcagtccgccgagttcgaccaggtcagcgtc
gatgccgccgatgcgaagccgaacggcccgcgcctgcgcgccaccggctcgatcatggcc
ttcgacggcttcctcaagctctaccgcgaggaccaggacgacgccccgggcgaggcgggc
gccgacgaggaaggccgcatgctgccgccgatggccgagcgcgaccggctcggccacgac
aaagccagcgccgagcagcacttcacccagccgccgccgcgctattcggaagcgagcctg
gtcaagaagctggaggagctgggcatcggccggccctcgacctatgcctcgatcctgtcg
gtgctgcaggaccgcaaatatgtccggctggaccgcaagcgcttcatccccgaggaccgc
gggcgactggtcacggccttcctgaccagcttcttcgagcgctacgtcgataccggcttc
accgccgggctggaggagcagctcgacgaaatctccgacggcaaggccgactggcgtgcc
atcatgcgcgccttctgggaggaattctcccgcgcggtggagcagacccgggacctgaag
atcagcgacgtgatctcggcgctggaccgcgacctggggccgcatttcttccccgcgcgc
gaggacggcaccgacccgcgcacctgcccggcctgcaacgaggggcggctcgggctcaag
ctgggccggcatggcagcttcatcggctgctcgaactacccgaactgccagtacacgcgg
cggctcgccatcgacagcggcgaggacgcgggcgacacgctgaaggaaggcatgcgggtg
ctcgggccgcatcccgacaccggcgaggaaatcaccgtccgccgcggcccctacggcgtc
tacgtgcagcagggcgagcaggtcgagggcagcaaggtcaagccccggcgcaccagcctg
ccgcgcggggtggacggcgacagcatcaccctggaacaggcggtggcgctgctgtcgctg
ccgcgcatcgtcggcatccatccggagacgaacgagccgatcgaggcgggcctcgggcgg
ttcgggccctacgtgaagatgggcggggtgttcgcctcgctcgaccgcgacgacgacgtg
ctggcagtcgggctgaaccgggcggtcgacctgctggcacgcaagctggcgagcgtgcgc
acgctcggcccgcacccgtccgaccgcgagccggtgctggtgcgcaagggacggttcggg
ccgtacgcgcagcacggcaacaaggtagcgacgctgccgcgcgacgtcgcgatggacgac
gtcaccctggaacaggcggtggcactgctggccgagaagggcaagctgctgaagccgcgc
ggcgccaaggcacgcaaggcggcgccgaagaaagaggccgccgcgccggaggcgccgaag
aaggccgcgccgaagaaagcggcggcaccgaagaaagccgcggcgaagccgaaggcggcg
gcgcgaaaggctggatga
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