Rhodovastum atsumiense: RHOA_1218
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Entry
RHOA_1218 CDS
T08162
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOA_1218 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rap03019
]
RHOA_1218 (rnr)
03016 Transfer RNA biogenesis [BR:
rap03016
]
RHOA_1218 (rnr)
Enzymes [BR:
rap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RHOA_1218 (rnr)
Messenger RNA biogenesis [BR:
rap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHOA_1218 (rnr)
Transfer RNA biogenesis [BR:
rap03016
]
Prokaryotic type
tRNA degradation factors
RHOA_1218 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
CAH2599815
LinkDB
All DBs
Position
RHOA:1293971..1296142
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AA seq
723 aa
AA seq
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MARKPNAPPPALPSREAIRRFIRESPGRVGKREIAREFGLDASQRVELRDLLKDLAREGE
VAPAGHRRFRAPGRLPEAMVVQVTGTDPDGDPIARPVEWEGDGPPPMILMRPEPRGVPAL
APGERVLARLRQIVGNKYEGRTLRRLTDEPGRVLGVYQPTPQGGGRIVPTDRRSRAEWRV
PPGEDGAAQPGEIVLATPLPSTGYGLKPARVVERLGNVGDARSVSLIVIHTHEIPNDFPA
AALEQAEKARSVGADGRTDLRDVPLVTIDGEDARDFDDAVFAEPDGEGFRLLVAIADVAH
YVWPGSPLDRAARLRGNSCYFPDRVVPMLPEALSNGWCSLRPNEDRGCLFVEMRIDAAGR
KQSHRFGRGLMRSAARLTYTEVQEARDSGRDLGLPVPALYAAYRLLLAAREARGTLDLDL
PERKVVLDDAGRVVSVTPRPRLDSHRLIEEFMVLANVAAAEELERLHQPCVYRVHAPPSE
EKLEALRSFLRTLDISLPPGNQLHPRDLDRVLRQVGGSEQAALINEVMLRSQSQAAYATE
NIGHFGLALARYAHFTSPIRRYADLLVHRALVRGLRLGPGGLDDDEPAQLADTAEHITAT
ERRAALAERDAIDRYLAAFMADKVGTVFAARISGVTRFGLFVTVADSGASGLVPVSTLPD
DFWFHDEATQTLSGRRTRIEFRLAQEVDVMLSEASPVTGGLVFHVLQGAGPGAARERGRP
RRR
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaagcccaacgccccgcccccggccctgcccagccgcgaggcgatccgtcgt
ttcatccgcgaatcccccggccgtgtcggcaagcgggagatcgcccgcgaattcggcctg
gacgcctcccagcgcgtggagttgcgtgatctgctgaaggacctcgcccgcgagggcgag
gtcgcgcctgccggccaccgccggttccgcgcccccggccgtctgcccgaggcgatggtg
gtgcaggtcaccggcaccgatccggatggcgaccccatcgcccggccggtcgagtgggag
ggcgatggcccgccgccgatgatcctgatgcgccccgagccgcgcggcgttccggcgctg
gccccgggcgagcgcgtgctggcacggctgcgccagatcgtcggcaacaaatacgaaggc
cgcacgctccggcgcctgaccgacgagccgggccgcgtgctcggggtctaccagccgact
ccgcagggcggcgggcgcattgtgcccaccgaccgacgctcccgcgcggaatggcgggtt
ccaccgggcgaggacggcgcggcgcagcccggcgagatcgtgctggcgacccccctgccc
tcgaccggctatggcctgaagcccgcccgggtggtcgagcgcctgggcaatgtgggcgac
gcgcggtcggtcagcctgatcgtcatccacacccacgagatcccgaacgacttccccgcc
gccgccctggaacaggcggagaaggcccggagcgtcggcgcggacgggcgcaccgacctg
cgcgacgtgccgctggtgacgatcgacggcgaggatgcgcgcgatttcgacgacgcggtg
ttcgctgaaccggatggcgagggcttccgcctgctggtggcgatcgccgatgtcgcgcat
tacgtgtggccgggctcaccgctcgaccgcgccgcccgtctgcgcggcaattcctgctat
ttccccgaccgcgtcgtgccgatgctgccggaggcgctgtccaacggctggtgcagcctg
cgcccgaacgaggatcgcggctgcctgttcgtcgagatgcgcatcgacgccgccgggcgg
aagcagtcgcatcgcttcggccgcggcctgatgcgcagcgccgcccgcctgacctatacc
gaggtccaggaagcgcgggactccggccgggacctcggcctgccggttccggcgctgtat
gccgcctaccggctgttgctggcggcgcgggaagcgcgcggcacgctcgacctcgacctg
cccgagcgcaaggtggtgctcgacgatgccggccgggtggtctcggtcacgccgcggccg
cggctggacagccaccggctgatcgaggaattcatggtgctggccaatgtcgccgccgcc
gaggaactggagcggctgcaccagccatgcgtctaccgcgtgcatgccccgccctcggaa
gagaagctggaggcgctgcggagcttcctgcgcacgctggatatctccctgccacccggc
aaccagttgcatccgcgcgacctcgaccgggtgctgcgccaggtcggcggcagcgagcag
gcggcgttgatcaacgaggtgatgctgcgcagccagtcccaggccgcctatgcaacggag
aatatcggtcatttcggtctggcactggcccgctacgcccatttcaccagcccgatccgc
cgctatgccgacctgctggtgcaccgcgccctggtgcgcgggctgcggctcgggccgggc
gggctcgacgacgacgagccggcgcaactggccgacaccgccgagcatatcactgcaacc
gaacgccgggcagccctggccgaacgcgacgccatcgaccgctatctggccgccttcatg
gccgacaaggtcggcacggtgttcgccgcgcgcatttccggcgtgacccggttcggtctt
ttcgtcacagttgcggacagtggcgcgagcggactcgtgccggtttccacgctgcccgat
gatttctggtttcatgacgaagcgacgcagaccctctcgggacgacggacacgcatcgag
ttccgcctggcccaggaggtggacgtgatgctgagcgaagcgagcccggtgaccggcggg
ctggtgttccatgtgctgcagggcgccgggccgggggcggcgcgcgaaaggggacggcca
cggcgaaggtga
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