Rhodovastum atsumiense: RHOA_1516
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Entry
RHOA_1516 CDS
T08162
Name
(GenBank) Type-4 uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHOA_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_1516
Enzymes [BR:
rap01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
RHOA_1516
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RHOA_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
CAH2600111
LinkDB
All DBs
Position
RHOA:1589204..1590058
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AA seq
284 aa
AA seq
DB search
MDALAALRLQLEWGADEALVETPVDRMAVAARPVAAPAATRARPAASAPSQLAAALRPPP
HPAQTQALLPGAAPAPAARAQEIAAAARTLEELRAALERFDGCPLSATATNLVFADGNPD
SGLMLVGEGPGADEDRIGKPFVGASGQFLDRMLASIGLDRSGYVITNLIPWRPPGNRNPT
DNEVLVCLPFLLRHIALVRPRRLVLLGALATRAVTGSNTGIRRMRGRWLDVTIPDLPAPV
PTLPMLHPAYLLRTPGAKREAWNDMLLLKRTMDDDMIIRKISES
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atggacgcattggcggcgctgcgcttgcagctggaatggggcgccgacgaggcgctcgtg
gagacgccggtagaccgcatggcggttgccgcccggcccgtcgctgccccggcggcaacg
agggcgcggccggcggcctcagccccgtcccagctcgccgccgcgctccgcccgccgccc
caccccgcgcagacgcaggccctgctgcctggcgccgcccctgccccggcggcacgggcc
caggaaatcgccgccgcggcgcgcacgctggaagagctgcgggccgccctggagcggttc
gacggctgccccctgtcggcaaccgcgaccaacctggtgttcgccgacggcaacccggac
tccggcctgatgctggtgggcgaaggcccgggagcggacgaggaccggatcggcaagccg
ttcgtcggggcgtcgggccagttcctcgaccggatgctcgcgagcatcgggctcgaccgc
agcggctacgtgatcaccaacctcattccctggcgcccccccggcaaccgcaacccgacc
gacaacgaggtcctggtctgcctgccgttcctgctacgccacatcgccctggtgcggccg
cggcggctggtgctgctgggggcgctggccacgcgggcggtgaccggcagcaacaccggc
atccgccgcatgcgcgggcgctggctggacgtcaccatccccgacctgcccgcgccggtc
ccgactctgcccatgctgcatcccgcatatctgctgcgcacgccgggcgcgaagcgggag
gcctggaatgatatgttgttgttgaagcgcaccatggatgacgacatgatcatccggaaa
atatctgaatcgtga
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