Rhodovastum atsumiense: RHOA_1615
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Entry
RHOA_1615 CDS
T08162
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOA_1615 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rap03019
]
RHOA_1615 (rne)
03009 Ribosome biogenesis [BR:
rap03009
]
RHOA_1615 (rne)
Enzymes [BR:
rap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RHOA_1615 (rne)
Messenger RNA biogenesis [BR:
rap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHOA_1615 (rne)
Ribosome biogenesis [BR:
rap03009
]
Prokaryotic type
rRNA processing factors
RHOA_1615 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAH2600211
LinkDB
All DBs
Position
RHOA:1702515..1705772
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AA seq
1085 aa
AA seq
DB search
MTKRMLIDASHAEETRVVVLDGSRLEDFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVE
YGGGRHGFLAFSEIHPDYYQIPIADRERLLAMQAEEARDEDEDEEPAAPPPPRRRGEQDD
APLAAAPAVTPEPLSEEAAQATEAPAPTEPAPVEPPEASEATATAEPAAEPAPEARVEAP
EATALPAAEPAAAPVEPEPAQPASDDNGTDAPIAAAPEAPAPDDITEARPPRAQPASMPH
DVRYGEFGVGEASLGEIPPAPVVSGEEPASEPAPAEAADVEEPDEAEPIPHLPPPETIGG
DGGDADAAEEVTPRRTARFLRNYRIQEVIRRRQIMLVQVVKEERGTKGAALTTYISLAGR
YCVLMPNSPRGGGISRKITSAADRKRLKEITAELDIPQGMGLIVRTAGANRPKPEIKRDC
EYLMRLWDDIREHTLRSVAPALIYEEASLIKRAIRDVYSRDIEEILVDGEDAWRAAHDFM
RMLMPSHARKVQLWRPNSYEGGGQPLFSRHQVEAQLDAMVSPTVQLRSGGYLVINQTEAL
VAIDVNSGRSTRERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESKKNNASV
ERRLKEALKTDRARIQVGHISHFGLLEMSRQRLRPSLAETSFITCPHCNGLGQVRSVESS
ALHVLRAIEDEGARARASLVMVHVASQVIMYILNNKRERLAEIEQRTGMRVQFAADETLV
PPQVRVEKLRGPVIEAERPAPAVIPVAPAPLPEPADVEETLIEVEEAEVIVEAAESAAPE
RNGDESERRRRRRRRRRRGGRDAAGNGVVSGEETEDGDESDEEPFPIEGAEQPDIPIGAF
PVVPEQPESLRQFAPVDIPEPAGVTEPSDVAEVAEIPEAAEAVEVAAPAEQVAAPEPVEA
EPAEPVAPPQSAEPAAAAERPEAAPTEESEEEGDANRRRRGRRGGRRRRRDGTTEGEAEA
PQAAPAPAAAAWSGPTPADPFAGHTYDIFDLIEQQEHAQQAPRPAPVAAPDDAGAEQPAE
PEAPPPAIEAPAPEPEAAVVAPEPEAEAEAAPAPSEPVVGSAVKPVIIGQDTVPVTERKR
GWWKR
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaacgcatgctgatcgacgccagccacgcggaagaaacccgcgtggtggtactg
gacggtagccgcctcgaagatttcgacgtcgagacatcgaccaagaagcaactgaaggga
aatatctatctggccaaggtggtccgcgtggagccgagcctccaggcggctttcgtggaa
tacggcggcggccgccacggcttcctggccttcagcgagatccaccccgactattaccag
atcccgatcgccgaccgcgaacgcctgctcgccatgcaggccgaggaagcccgcgacgag
gatgaggacgaggagcccgctgcccccccgccccctcgccggcgcggcgaacaggatgat
gcaccgctcgcggccgccccggccgtgacgccggagcccctgtcggaggaagcggcccag
gcgacggaagcccccgcccccaccgagcccgcgccggtggagccgcccgaggcgtccgaa
gcgacggcaactgccgaaccggccgcggagcccgcgccggaggcacgggttgaagccccc
gaggccacggcccttcccgcggccgagcctgcggctgcgcccgtggagcccgaaccggcg
cagcccgcatccgacgacaacggcactgatgcccccatcgccgcggcacccgaggcccct
gcccctgacgacatcacagaggcacgccccccgcgggcacagccggcatcgatgccgcac
gacgtgcgctatggcgagttcggcgtcggcgaagccagcctcggtgaaatcccccccgcc
ccggtggtgagcggcgaggaaccggcgagcgaaccggccccggccgaggccgccgatgtc
gaggaacccgacgaggccgagccgatcccgcacctgccgccgcccgagaccatcggtggc
gatggtggcgacgccgacgccgccgaggaagtcaccccccggcgcacggcccgcttcctg
cgcaactaccgcatccaggaggtgatccggcgccggcagatcatgctggtgcaggtggtc
aaggaagagcggggcaccaagggcgcggcgctgaccacctacatctcgctcgccggccgc
tattgcgtgctgatgcccaactccccccgcggcggcggcatctcccgcaagatcacctcg
gccgccgatcgcaagcggctcaaggagatcaccgccgagctcgacatcccgcagggcatg
ggcctgatcgtgcgcaccgccggcgccaaccggcccaagcccgagatcaagcgtgactgc
gagtacctgatgcggctgtgggacgacatccgtgaacacacgctgcgctcggtcgcgccc
gcgctgatctacgaggaagcgagcctgatcaagcgcgcgatccgcgacgtctactcgcgc
gacatcgaggaaatcctcgtcgacggcgaggacgcgtggcgcgccgcccacgatttcatg
cgcatgctgatgccgagccacgcccgcaaggtgcagctctggcgccccaattcatatgaa
gggggcgggcagccgctgttcagccggcaccaggtcgaagcgcagctcgacgccatggtc
tcgcccacggtgcagttgcgctccggcggctacctggtgatcaaccagaccgaggccctg
gtcgcgatcgacgtcaattccggccgctccacccgcgagcgcggcatcgaggagacggcg
ctgcgcaccaacctcgaggccgccgacgaggtggcccggcagttgcgcctgcgcgacctc
gccggcctgatcgtcatcgacttcatcgacatggagtcgaagaagaacaacgcctcggtc
gagcgccggctgaaggaagcactgaagaccgaccgcgcccgcatccaggtcggccatatc
agccatttcggcctgctggaaatgagccgccagcgcctgcggccctcgctcgccgagacc
agcttcatcacctgcccgcactgcaacgggctgggccaggtccgcagcgtggagagcagc
gccctgcacgtgctgcgcgccatcgaggacgagggcgcccgcgcccgggcgagcctggtc
atggtgcacgtcgccagccaggtgatcatgtacatcctcaacaacaagcgcgagcggctg
gccgagatcgagcagcgcaccggcatgcgcgtgcaattcgcggcggacgagacgctggtg
ccgccgcaggtgcgcgtcgagaagctgcgcggaccggtcatcgaggccgagcgccccgcc
ccggcggtcatcccggtcgcgcccgcgccgttgcccgagcccgccgatgtcgaggaaacg
ctgatcgaggtcgaggaagccgaggtcatcgtcgaggccgccgagagcgccgcgcccgaa
cggaacggggatgagagcgaacgccgccggcggcggcggcggcggcggcggcgcggcggc
cgtgacgcggcaggcaacggcgtggtctccggcgaggagacggaagacggcgacgagagc
gatgaggagcccttccccatcgagggcgccgagcagccggatatcccgatcggtgccttc
ccggtcgtgcccgagcagcctgaatcgctccgccagttcgccccggtggacatccccgag
ccggccggcgtgaccgaaccttcggacgtcgccgaggtggcagagatacccgaggcggca
gaggcagtagaggtggccgcccccgcggagcaggttgccgcccccgaaccggtggaagcg
gagccggccgaaccggtcgcaccgccacaatcggccgaaccggccgccgcggccgagcgc
cccgaagccgctccgacggaggaaagcgaggaggaaggcgacgccaaccgccggcgtcgc
ggccggcgcggcggccgtcgccggcgccgtgatgggaccaccgaaggcgaagccgaagcc
ccgcaggccgcgccggctccggcggctgccgcgtggtcgggtccgacaccggccgatccc
ttcgccggtcacacctacgacatcttcgacctgatcgagcagcaggagcacgcccagcag
gccccccggcccgccccggttgccgcccccgatgacgccggcgccgaacaaccggccgaa
cccgaggccccaccgccggccatcgaggcaccggcgccggaaccggaagccgcggtggtg
gcaccggagccggaagcggaagcggaagccgctcctgcgccgtccgaaccggtcgtcggt
tcggcggtgaagccggtgatcatcggccaggacacggtaccggtcacggaacgcaaacgg
gggtggtggaaacgctga
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