Rhodovastum atsumiense: RHOA_2795
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Entry
RHOA_2795 CDS
T08162
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOA_2795 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rap03019
]
RHOA_2795 (pnp)
03016 Transfer RNA biogenesis [BR:
rap03016
]
RHOA_2795 (pnp)
Enzymes [BR:
rap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RHOA_2795 (pnp)
Messenger RNA biogenesis [BR:
rap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RHOA_2795 (pnp)
Transfer RNA biogenesis [BR:
rap03016
]
Prokaryotic type
tRNA degradation factors
RHOA_2795 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
HEAT_2
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
CAH2601411
LinkDB
All DBs
Position
RHOA:2899733..2901937
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AA seq
734 aa
AA seq
DB search
MFNYYRKELDWGGRKLVLETGKVARQADGAVMVSYGDTIVLCTAVGMRTPKPGQDFFPLT
VNYQEKAFAAGKIPGGFFKREGRPSEMETLKSRLIDRPIRPLFPEGFKNEVQVIATVLSH
DLENDPDIVAMVGCSAALTLSGIPFFGPVGAARVGYVDGQYVLNPTADQMKKTTLELVVA
GTTEGVLMVESEADELTEETMLGAVTFGHAAFQPVIQAIIELAEVAAKEPWPLPEESEEQ
KTLRARVDSLARAGLADAYREPQKQVRHEKIDAVRKAAAEALAAEGLDVEKAKGLFKDLE
ADIVRNAILDTGLRIDGRDTKTVRPIVAEVGVLPRAHGSALFTRGETQAFVVATLGTAQD
EQVIDALEGEYREHFMLHYNFPPYSVGETGRLGSPGRREIGHGKLAWRAVHPLLPEKEKF
PYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLKSPVAGIAMGLIKEDRGYAVLTDI
LGDEDHLGDMDFKVAGTERGVTSLQMDIKITSITPEIMQVALGQARDGRLHILGEMAKAL
TGARTDVAATAPRITVINIPKEKIRDVIGTGGKVIREIVEQTGAKIDIEDDGTIKIAATD
MTKTQAAIDWIRGIVAEPEIGVIYTGKVVKTAEFGAFVNFLGSRDGLVHISELAQGRVAK
TSDVVNVGDSVKVKVLGFDDRGKVKLSMRVVDQATGEDISEKVGPKGGRNERGGRGGQGP
DGEATNGSSDAAAE
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgttcaattactaccgcaaggagcttgactggggtggccgcaagctggtcctcgagacc
ggcaaggtcgcgcgtcaggccgacggcgcggtgatggtgagctacggcgacaccatcgtt
ctgtgtacggcggtgggcatgcgtacgcccaagccgggccaggatttcttccccctgacc
gtgaactaccaggagaaggccttcgccgcgggcaagatcccgggcggcttcttcaagcgc
gagggccggccctcggagatggagacgctgaagtcgcgcctgatcgaccggccgatccgc
ccgctgttcccggagggcttcaagaacgaggtccaggtcatcgccaccgtgctcagccat
gacctggaaaacgatcccgacatcgtcgccatggtcggctgctcggccgcgctgacgctg
tccggcattccgttcttcggcccggtgggcgccgcccgcgtcggctacgtcgacggccag
tacgtgctcaacccgaccgccgatcagatgaagaagaccacgctcgagctggtggtggcc
ggcaccaccgagggcgtgctgatggtcgaatccgaggcggatgagctgaccgaggagacg
atgctcggcgccgtgaccttcgggcacgcggcgttccagccggtgatccaggcgatcatc
gagctggccgaggtggccgccaaggagccctggccgctgccggaggagagcgaggagcag
aagaccctgcgcgcccgcgtcgacagcctggcccgtgccggcctggccgatgcctatcgc
gagccgcagaagcaggtccgccacgagaagatcgacgcggtccgcaaggccgccgccgag
gcgctggcggccgaggggctcgatgtcgagaaggccaagggcctgttcaaggacctcgag
gccgacatcgtccgcaacgccatcctcgacaccggcctgcgcatcgacggccgcgacacg
aagaccgtgcgcccgatcgtggccgaggtcggcgtgctgccgcgcgcgcatggcagcgcc
ctgttcacccgcggcgagacgcaggccttcgtggtggcgacgctcggcacggcgcaggac
gagcaggtgatcgacgcgctcgagggcgagtaccgcgagcacttcatgcttcactacaac
ttcccgccgtactccgttggtgaaacgggccgtctcggcagcccgggccggcgcgagatc
ggccatggcaagctggcctggcgcgccgtgcatccgttgcttccggagaaggagaagttc
ccgtataccttgcgggtggtttccgagatcaccgagagcaacgggtcttcctcgatggcg
acggtgtgcggcacttcgctcgcgctgatggatgccggcgtgccgctgaagagcccggtg
gcgggcatcgccatggggctgatcaaggaagatcgcggctacgccgtgctcaccgacatc
ctcggcgacgaggaccatctcggcgacatggacttcaaggtggccggcaccgagcgtggc
gtcaccagcctgcagatggacatcaagatcacctcgatcacgccggagatcatgcaggtg
gcgctcggccaggcgcgtgacggccggctgcacatcctgggcgagatggccaaggcgttg
accggggcgcgcaccgacgtcgccgcgaccgcgccgcggatcaccgtgatcaacatcccc
aaggagaagatccgcgacgtgatcggcaccggcggcaaggtgatccgcgagatcgtcgag
cagaccggcgccaagatcgacatcgaggacgacggcaccatcaagatcgccgccaccgac
atgaccaagacccaggcggcgatcgactggatccgcggcatcgtcgccgagcccgaaatc
ggcgtgatctacaccggcaaggtggtcaagaccgccgagttcggcgctttcgtgaacttc
ctcggctcccgcgacgggctggttcacatcagcgagctggcgcagggccgggtcgccaag
accagcgacgtggtcaatgtcggtgacagcgtgaaagtgaaggtgctgggcttcgacgac
cgcggcaaggtgaagttgtccatgcgcgtggttgaccaggccaccggcgaggacatcagc
gagaaggtcggaccgaagggcggccgcaacgagcgcggcgggcgcggcggccaggggccg
gacggagaggccacgaacgggtcgtccgacgccgcggccgagtga
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