Rhodovastum atsumiense: RHOA_2907
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Entry
RHOA_2907 CDS
T08162
Symbol
addB
Name
(GenBank) Double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rap
Rhodovastum atsumiense
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_2907 (addB)
Enzymes [BR:
rap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHOA_2907 (addB)
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RHOA_2907 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
CAH2601523
LinkDB
All DBs
Position
RHOA:3027840..3030800
Genome browser
AA seq
986 aa
AA seq
DB search
MTEAAASPRRLRLATIPPDVPFLDVLAARWLAEHGGDALGRGLILLPTRRAARALAEAFL
RASGGRALVLPRITAFGALDEAPLTMTGALDLLPAIDPQERLAALAALVMKLPPEQGGAG
SVDRALMLARELARLMDEAERAEIDLASALQQAADAAHAEHWQATLRFLEIVTRHWPDWL
AAQGVLNPAARQVALLQAQAAEWAAHPPAEPVWAAGTTAGIPAVAALLRVVAGLPDGQVV
LPGLDLDLPQEAWEAIGEAHPQCGLQRLLAGLGATRGDVVSWDGAAAAPAGRVRTLARAL
LPAAALPTWREAGPVATTGLFRLEAADEQEEAAAIALILRDTLERRGARAALVTPDRQLA
GRVSSELLRWGVVADDSAGEALAESPPAVFLRLLAETVTSRFAPVPLLGLLKHPLAAAGL
EPVACRMAARLLEVEALRGPRPAAGLGGLRQRAQAAPEPARDLLARLETCLDPLLRAATA
AALPPATLLAALIEAGEALATSEALPGPARLWAHEEGEALAVLLAGAQPALAHLPDAPPT
VLPGLLDALLEGAVVRSRRALRGREGAEHPRVFIWGLLEARLQTAEVVVLGGLVEGVWPP
ATDPGPWMSRPMRIKAGLPGTEEVVGLAAHDFLMAACSAPTVVLSCPRRRDRAPAVPARW
LARLEAFLAGQGQRLPSHPAAGWARLLDQPAGPPAPVRPPAPCPPVRLRPRRLSVTEIET
WLTDPYAIHAKHILKLRPLKPLEEATDAADYGALVHRGMQIFLDEVGADWPADAPQRLAA
AMDRALAEAGLRPALQEWWRPRLARIAVWLAPHERERRVAGPQLIRGEVKGEWTLAVPGG
FTLVGRADRIERRADGRLTIIDYKTGAPPSDKDVEAGFRPQLPLEAAMAEAGAFGPELTG
TAAELVYWHLSGGFVPAEERSILRGDATRIAAAVATAREKLMTLVTAFDDPKRPYLSQPH
PGRVPRFSDYAQLARVAEWDLSGGGE
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
gtgacagaggcggccgcgtcgccgcgccgtctgcgcctggcgaccatcccccccgacgtg
ccgttcctcgacgtgctggccgcacgctggctggccgagcatggcggggacgcgctcggg
cgcgggctgatcctgctgccgacccgccgcgccgcccgcgcgctcgccgaggcgttcctg
cgcgcgagcggcggccgggcgctggtgctgccgcgcatcaccgccttcggcgcgctggac
gaggcgccgctgaccatgaccggcgcgctcgacctgttgccggcgatcgaccctcaggag
cggctggcggcgctggccgcgctggtgatgaagctgccgccggagcagggcggggcgggc
agcgtcgaccgggcgctgatgctggcgcgcgaactggcgcggctgatggacgaggccgag
cgggcggagatcgacctcgcctcggcgttgcagcaggcagcggatgcggcgcatgccgag
cactggcaggcgacgctgcgcttcctggagatcgtcacccggcactggccggactggctg
gccgcgcagggggtgctcaacccggccgcccgccaggtcgcgctgttgcaggcgcaggcg
gcggaatgggcggcgcatccgcccgccgagccggtctgggctgccggcaccaccgccggc
attcccgcggtggcggcgctgctgcgcgtggtcgccgggctgccggacgggcaggtggtg
ctgcccggacttgatctcgatttgccgcaggaggcctgggaggcgatcggggaggcgcat
ccgcaatgcggcctgcagcgtctgctggccgggctcggggcgacccgcggcgatgtcgtg
tcctgggacggcgcggcggcggcgccggccggccgggtccgcaccctggcgcgggcattg
ctgccggccgccgccctgccgacatggcgcgaggccggcccggtcgccaccaccggcctg
ttccgtctggaagcggccgacgagcaggaggaagcggcggcgatcgcgctgatcctgcgc
gacacgctggagcgacgcggcgcccgcgcggcgctggtcacgcccgaccggcagcttgcc
ggacgggtgtcctcggagctgctgcgctggggcgtggtcgccgatgacagtgccggcgag
gcactggccgagtccccgccggcggtgttcctgcgcctgctggccgagacggtcacttcc
cgcttcgcgccggtgcccctgctcgggctgctcaagcatccgctcgccgcggcggggctg
gagccggtcgcctgccggatggcggcgcgcctgctggaagtggaagcgttgcgcggcccc
cggcccgccgccgggctgggcgggctgcggcagcgcgcgcaggcggcgccggagccggcg
cgcgacctgctggcgcgcctggagacctgcctcgacccgctgctgcgcgccgccacggcg
gcggcgctgccccccgccaccctgctcgccgccctgatcgaagccggcgaggcgctggcg
accagcgaggccctgccggggccggcgcggctctgggcgcacgaggaaggcgaggcgctg
gcggtgctgctggccggtgcgcagccggcgctggcgcatctgccggatgcgccgcccacg
gtgctgcccggcctgctggatgcgttgctggaaggcgcggtggtgcgcagccgtcgcgcc
ctgcgtggccgcgagggcgccgagcatccgcgtgtcttcatctggggcctgctggaagcc
cggctgcagaccgccgaggtggtggtgctcggcgggctggtcgagggcgtctggccgccg
gccaccgatccggggccgtggatgagtcggccgatgcgcatcaaggcggggctgcccggc
accgaggaggtggtcgggctggccgcgcatgatttcctgatggccgcctgttcggcgccg
accgtggtgctgtcctgcccgcgccggcgtgaccgtgccccggcggtgccggcgcgctgg
ctcgcccggctggaagccttcctggccgggcaggggcagcgtcttccgtcgcatccggcc
gccggctgggcgcggctgctcgaccagcccgccgggccgcccgcgccggtgcgtccgccg
gcgccctgtccgccggtgcggctgcgcccgcgccggctgagcgtcaccgagatcgagacc
tggctcaccgatccctacgccatccacgccaagcacatcctgaagctgaggccgctcaag
ccgctggaggaggcgaccgacgccgccgattacggcgccctggtgcaccggggcatgcag
atcttcctcgacgaggtcggcgccgactggccggcggatgcgccgcagcgtctggcggcg
gcgatggaccgggcgctggccgaggccgggctgcggccggcgctgcaggaatggtggcgg
cccaggctggcgcgcatcgccgtctggctcgccccgcacgagcgcgagcgccgcgtcgcc
gggccgcagttgatccgtggcgaggtcaagggcgagtggaccctggcggtgccgggtggc
ttcaccctggtcggccgggccgaccgcatcgagcgccgggccgatggacgactcacgatc
atcgactacaagaccggggcgcccccgtccgacaaggatgtcgaggcggggttccgtccg
cagttgccgctggaagcggcgatggccgaggcgggtgccttcggcccggagctgaccggg
accgctgccgagctggtctactggcacctgagcggcggcttcgtgccggcggaggagcgc
agcatcctccgcggtgatgccacccgcatcgccgcggcggtggccaccgcgcgggagaag
ctgatgaccctggtgacggcgttcgacgacccgaagcggccctatttgtcgcagccgcat
cccggtcgcgtgccgcgcttctccgattacgcccagttggcgcgggtcgccgagtgggac
ctgtcgggaggcggggaatga
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