KEGG   Rhodovastum atsumiense: RHOA_3035
Entry
RHOA_3035         CDS       T08162                                 
Symbol
rpoC
Name
(GenBank) RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rap  Rhodovastum atsumiense
Pathway
rap03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RHOA_3035 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rap03021]
    RHOA_3035 (rpoC)
   03400 DNA repair and recombination proteins [BR:rap03400]
    RHOA_3035 (rpoC)
Enzymes [BR:rap01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RHOA_3035 (rpoC)
Transcription machinery [BR:rap03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RHOA_3035 (rpoC)
DNA repair and recombination proteins [BR:rap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RHOA_3035 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: CAH2601651
LinkDB
Position
RHOA:3161150..3165331
AA seq 1393 aa
MNELMKILGQTGQSMTFDQIRIQMASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDLTLKELEKILYFESYVVLEPGLTDMKLHQLLTEDQLMAKQDEFGEDAFRAG
IGAEAVKGVLNGIDCDAEKVKLRAELKETTSEAKRKKLVKRLKLIEAFSESGARPEWMIL
DVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYLSLETPEYRAVEDAKAPAFASLADIEH
GLNAGALKLHDKIQVPRRLVHLPEETDPATGRRLTRVVTTPGRTLIAQVLPKHPNVPFSL
INRQLTKKNVSDVIDAVYRHCGQKECVIFADRLMGLGFRQAAKAGISFGKDDLIIPAEKQ
ALIGKTQAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVATAMMREISKQEQGTPTN
AVWMMSHSGARGSPAQMRQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLEYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDCIIVEDDCGTERGLTVRPVMDGGEVVSSLSERIL
GRTTAEDVLDPVSGAVLVANNVLIEEEHAERIEKAGVETLKIRSVLTCEAKIGVCAHCYG
RDLARGTPVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEASHDGVASV
KNRSVVMNSQNVPVVMSRNCEIVLADDKGRERARFRVPYGARLLADEGAQVARGQKLAEW
DPYTLPIITERAGRVEYLDLIEGVTLVERMDEVTGLSSKVVVDYKQNARGVDLRPRLQLK
DDHGGVVRLPNGTDARYFLSPDSILSVENGAEVHAGDVLARIPREGSKTRDITGGLPRVA
ELFEARRPKDHAIIAEIDGRVEFGKDYKAKRRVIVKNDETGEETEYLIPKGKHVSVQEGD
FVRRGDPLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQ
KVEILDPGDTTFLAGEQVDRFDFERELSKLGRDDRPAVAMPVLQGITKASLQTHSFISAA
SFQETTRVLTEAATAGKVDNLTGLKENVIVGRLIPAGTGSVMNRMRAIAAGRDQRTLRQQ
ETPAIAGRGIAAE
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgaacgagctgatgaagatccttggccagaccggccagtcgatgaccttcgatcagatc
cgcatccagatggcctcgccggagcagatccgctcctggtcgtacggcgagatcaagaag
cccgagaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcggatgaagttc
cgcgggatcatctgcgagaagtgcggcgtcgaggtcacgctggccaaggtgcgccgcgag
cgcatgggccatatcgagctggcgagccccgtcgcgcatatctggttcctgaagtcgttg
cccagccgcatcgggctgatggtcgacctgaccctgaaggagctggagaagatcctgtat
ttcgagagctacgtggttctcgagccgggtctgaccgacatgaagctgcatcagctgctg
accgaagatcagctgatggccaagcaggacgagttcggcgaggacgccttccgcgccggc
atcggcgccgaggcggtcaagggcgtgctgaacggcatcgattgcgacgccgagaaggtg
aagctgcgcgccgagctgaaggaaaccaccagcgaggccaagcgcaagaagctggtcaag
cgcctgaagctgatcgaggccttctccgaatccggcgcgcggccggaatggatgatcctg
gacgtgatcccggtcatcccgccggagctgcgcccgctggtgccgctggatggcgggcgc
ttcgccacgtccgacctgaacgacctctatcgccgcgtgatcaaccgcaacaaccgcctg
aagcggctgatcgagctgcgcgcccctgacatcatcgtgcgcaatgaaaagcgcatgctg
caggaggcggtggacgcgctgttcgacaatggccgccgcggccgtgccatcaccggcgcc
aacaagcggccgctgaagtcgctctccgacatgctgaagggcaagcaggggcggttccgc
cagaacctgttgggcaagcgcgtcgactattccggccgttcggtgatcgtggtcgggccg
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctggagctgttcaagccc
ttcatctacgccaagctggagaaatacggccacgccaccaccatcaaggccgccaagcgg
atggtggagaaggaacgccccgaggtctgggacatcctcgaagaggtgatccgcgagcac
ccggtgatgctgaaccgggcgccgacgctgcaccgcctgggcatccaggccttcgagccg
gtgctgatcgagggcaaggcgatccagctgcacccgctggtctgcacggccttcaacgcc
gacttcgacggtgaccagatggcggtgcacgtgccgctgtcgctggaagcgcagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgccaacggcaagccgatc
atcgtgccgagccaggacatcgtgctcggcatctactacctgagcctggagacgcccgag
taccgcgccgtcgaggatgccaaggcccccgccttcgcctcgctggccgatatcgagcac
gggctgaacgctggcgcgctgaagctgcatgacaagatccaggtgccgcgccgcctggtg
cacctgcccgaggaaaccgacccggccaccgggcggcggttgacccgcgtggtcaccacc
ccgggccgtaccctgatcgcgcaggtgctgcccaagcacccgaacgtgcccttcagcctg
atcaaccggcagttgaccaagaagaacgtctcggacgtgatcgacgcggtctaccgccat
tgcggccagaaggagtgcgtgatcttcgccgaccggctgatggggctcggcttccgccag
gccgccaaggcgggcatctccttcggcaaggacgacctgatcatcccggccgagaagcag
gcgctgatcggcaagacccaggccgaggtgaaagagttcgagcagcagtaccaggacggc
ctgatcaccgccggcgagcgctacaacaaggtggtcgacgcctggtcgcgctgcaccgac
gaggtcgccaccgcgatgatgcgcgagatctccaagcaggagcagggcacgcccaccaac
gcggtgtggatgatgagccactccggtgcccgtggctcgcccgcccagatgcgccagctg
gccggcatgcgcggtctgatggccaagccgtcgggcgagatcatcgagcagccgatcatc
gccaacttcaaggaaggcctgtcggtgctggagtacttcaactccacccacggcgcccgc
aagggcctggccgacaccgcgctgaagacggcgaactcgggctacctgacccgccgcctg
gtcgacgtcgcccaggactgcatcatcgtcgaggacgattgcggcaccgagcgcggcctg
accgtgcgcccggtgatggatggcggcgaggtggtctcctcgctgtccgagcgcatcctg
ggccgcaccacggccgaggacgtgctggacccggtctcgggcgcggtgctggtggcgaac
aacgtgctgatcgaggaagagcacgccgagcgcatcgagaaggcgggcgtcgagacgctg
aagatccgctcggtgctgacctgcgaggcgaagatcggcgtctgcgcccattgctacggg
cgtgacctcgcgcgcggcacgccggtgaacgtgggcgaggcggtcggcgtgatcgcggcg
cagtcgatcggcgagccgggcacgcagctgaccatgcgcaccttccacatcggcggcgcc
gcccagcgcggcgccgagcagtcgagcgtggaggcgagccacgacggcgtggcgtcggtg
aagaaccgcagcgtcgtcatgaacagccagaacgtgccggtcgtcatgagccgcaactgc
gagatcgtgctcgccgacgacaagggccgcgagcgcgcccgcttccgcgtgccctacggt
gcgcggctgctggcggacgaaggggcccaggtcgcgcgtggccagaagctggccgagtgg
gatccgtacaccctgccgatcatcacagagcgggcgggcagggtggagtacctcgacctg
atcgagggcgtcaccctggtcgagcgcatggacgaggtgaccggcctgtcgtcgaaggtg
gtagtcgactacaagcagaacgcccgtggcgtcgatctgcggccccggctgcagctgaag
gacgaccatggcggggtggtgcgcctgcccaacggcaccgacgcccgctacttcctcagc
cccgactcgatcctgtcggtggagaacggcgccgaggtgcatgccggtgacgtgctggcc
cgcatcccgcgcgagggcagcaagacccgcgacatcaccggcggtctgccgcgcgtggcc
gagctgttcgaggcgcgccggccgaaggaccacgccatcatcgccgagatcgacgggcgg
gtcgaattcgggaaggactacaaggccaagcgccgcgtcatcgtgaagaacgacgagacc
ggcgaggaaaccgagtacctgatcccgaagggcaagcacgtctcggtgcaggaaggcgac
ttcgtccgccgcggcgacccgctggtggacggcccgcgcgtgccgcacgacatcctgaag
gtgctgggggtcgaggccctgtcggactacctagtgaacgaaatccaggacgtgtaccgg
ctgcagggcgtgaagatcaacgacaagcacatcgaggtcatcgtccggcagatgctgcag
aaggtcgagatcctcgacccgggcgacaccaccttcctggcgggggagcaggtcgatcgc
ttcgacttcgagcgcgaattgtccaagctcggccgcgacgaccgcccggcggtggcgatg
ccggtgctgcaaggcatcaccaaggccagcctgcagacgcacagcttcatcagcgccgcg
tcgttccaggagacgacccgggtactgaccgaggcggcgaccgccggcaaggtcgacaac
ctgaccgggctcaaggagaacgtgatcgtcgggcggctgatcccggcgggcacgggcagc
gtgatgaaccgcatgcgcgccatcgccgccggccgcgaccagcgcaccctgcgccagcag
gagacgccggcaatcgccgggcggggcatcgcggcagagtaa

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