Rhodovastum atsumiense: RHOA_5085
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Entry
RHOA_5085 CDS
T08162
Name
(GenBank) Helix-turn-helix domain-containing protein
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
rap
Rhodovastum atsumiense
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rap03000
]
RHOA_5085
Transcription factors [BR:
rap03000
]
Prokaryotic type
Helix-turn-helix
Other families
RHOA_5085
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GAF
HTH_Crp_2
GAF_2
MarR
MarR_2
Motif
Other DBs
NCBI-ProteinID:
CAH2603837
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All DBs
Position
RHOA:complement(5220941..5222725)
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AA seq
594 aa
AA seq
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MSQCTDGRSDVCYIACSAHDGPLPDRCVTCGESPVTGRASVQSCQVSAVQDELAGAPHPL
MLARHHFLAHGVVPAGVPLAILRSWQRSAAHGLDPANALAEEAVSRTELREVLERNQDLV
QAAWGEIETLCRDTEAAGGIVVLTDPDGVILVRAGSTSFAEQADRIALRPGMRWSEPVVG
TNAIGTALFERREISVFGAEHFLAPHSVLSCSATPVFGPRGEIVGVLDLSSSAQLPHGYT
LALVRRAAEQIERLLFQRAFSTQEQMHLHSNPYLLGSPHEGLLAFDGDRLVGANRNAVSL
LGLAWSAIGSVRFDQLFSVQQASIQRNASSDECLVQTMRGSTLFARLQQPPRSRPPIPQA
APPGDVTPRPIPPGGGPELPAREALERLLTNVPPGQLRTRRLKPGHLLYGAEEANEGRPC
IVVVRSGRLRCFISFEGKELTLFMLEAGDAILLHPQSILEAKKSCDVAIMRQSTFRALAS
NDPNLGLSMMSAVEWMLQKSIRIIEEMAFHGVKHRLVRVLCETADRDGRHTEHGTVIDIA
PNGEDLAMQVGATRQSVSTVIAGLIRAGVIQRMGSCAIVVPSLERLKAEVQTPG
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaatgcacggacgggcggagtgacgtctgctacatagcctgcagcgcccacgac
ggaccgcttccagatcgttgcgtcacctgtggggaaagcccggtgaccggccgggcctcg
gtgcagtcctgccaggtctctgcggtgcaggacgagttggcgggggcgccccatccgctg
atgctggcacggcatcatttcctggcgcatggcgtggtcccggcgggggttccccttgcc
atcctgcgctcatggcagcgcagtgccgcgcatgggctcgatccggccaacgcgctggcc
gaggaagcggtctcgcgcaccgagttgcgcgaggtgctggagcgcaaccaggacctggtg
caggctgcctggggcgagatcgagaccttgtgccgcgacaccgaagccgccggcggcatc
gtcgtgctgaccgatccggatggcgtcatcctggtgcgggccggcagcaccagcttcgcc
gaacaggccgaccggatcgcactgcggccgggcatgcgctggagcgaacccgtcgtcggc
accaatgcgatcggcaccgccctgttcgagcggcgggagatctcggtattcggtgccgag
cacttcctggcaccacacagcgtgctgagctgctcggccacgccggttttcgggccgcgc
ggcgagatcgtcggcgtgctcgacctctcttcctccgcgcagttgccgcatggctatacg
ctggcgctggtgcggcgcgccgccgagcagatcgaacgcctgctgtttcagcgcgccttc
agcacgcaggaacagatgcacctgcattccaatccctacctgctcggcagcccgcacgaa
ggactgctggcctttgacggcgaccggctggtcggggccaaccgcaacgccgtgagcctg
ctcggcctggcctggtcggccatcgggtcggtgcgcttcgatcagctgttctcggtgcag
caggccagcatccagcgcaatgcctcttccgacgaatgcctggtgcagaccatgcgtggc
agcaccctgttcgcccggctgcagcagccgccccggtcgcggccaccgataccgcaagcg
gcccctcccggcgacgtcaccccccggcccatcccgcccggtggtggaccggagctgcca
gcgcgcgaagcgctggagcgcctgctgaccaacgtcccgcccggtcagctacgcacccgt
cgcctgaagccgggccatctgctctatggcgcggaggaagccaatgaaggccgcccctgc
atcgtggtagtccgcagtggtcggctgcgctgcttcatctcgttcgaaggcaaggaactg
acgctgttcatgctggaagcgggagacgcgatcctgctgcatccccagtcgatcctggaa
gccaagaaaagctgcgacgtcgccatcatgcgccagtccacgttccgggcgctggccagc
aatgatccgaatctcggcctgtcgatgatgtcggccgtcgagtggatgctgcagaaatcg
atccgcatcatcgaggagatggcttttcacggcgtcaagcaccggctggtgcgggtgctg
tgcgagacggccgatcgtgacggacggcacacggagcatggcactgtcatcgacatcgcc
ccgaacggcgaggacctggccatgcaggtgggcgcgacgcggcaatcggtttcgacggtc
atcgcaggtctgatccgcgccggcgtgatccagcggatgggcagttgcgccatcgtggtg
ccgagcctggaacggctgaaggcggaagttcagacgccgggttga
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