Rhodovastum atsumiense: RHOA_5139
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Entry
RHOA_5139 CDS
T08162
Symbol
speF
Name
(GenBank) Inducible ornithine decarboxylase
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap00330
Arginine and proline metabolism
rap00480
Glutathione metabolism
rap01100
Metabolic pathways
rap01110
Biosynthesis of secondary metabolites
rap04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
RHOA_5139 (speF)
09106 Metabolism of other amino acids
00480 Glutathione metabolism
RHOA_5139 (speF)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
RHOA_5139 (speF)
Enzymes [BR:
rap01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
RHOA_5139 (speF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
Motif
Other DBs
NCBI-ProteinID:
CAH2603891
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All DBs
Position
RHOA:complement(5282633..5284864)
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AA seq
743 aa
AA seq
DB search
MRAHRPDDAELAIRTDAAIGCIVVDWGKGGALGRAAALIALVRKRGLDVPILILVRRKRL
EDIPVEVLNDVDGYVFLAEETPEFIAKNLVGRLRNYAETLKTPFFGALVDYAEEGNQLWT
CPGHNGGIFYGRSPIGRIFVEHLGEAVFRDDLDNSVLDLGDLLTHEGPALAAQREAARIF
GAERTYFVLNGTSTSNKIALQALVAEGDLVLFDRNNHKAAHHGALFLGGGIPVYLETDRN
AYGLIGPIDAEALDETRIRECIRCHPLVTDPDAWQRPRPFRVAVIEQCTYDGTIISAELI
LQKLGPLCDYIVFDEAWAGFMKFHPLYRGRYAMGLRGLNETQPGIIATQSAHKQLAGLSQ
TSQIHVRDRHIADQPRRLGHRRFNEMFLLHASTSPFYPLFASLDVGAHMMKGRQGEVLWD
DTIRLGIELRKKMRAIRREFAEKETDAARRWFFEPFVPEVVMWRGDGEVAVPTPWEQVPT
DDLATDPQYWLLNPGDAWHGFAHVAPGYAMTDPNKLTLLTPGIDRQTSEYQAHGVPAPVL
AEYLRENRIVAEKNDLHSILFLLTPGVESSKAGTLLSWLVTFKKLHDDNAPLLEVMPELV
RRRSPRYDGVGLRDLCAEMHGFYRDRQLGRLQRLQFRKRHFPTIAMKPDEAVRQLVRNNV
DYLPIDCISGRIAATLMLVYPPGIATIVPGERLDERAQPMIEYLRVFECAANLFPGFETE
IQGVYREHEANGSMRFYTYVVRE
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgctcaccggccggacgatgcggaactggcgatccgcaccgatgcagccattggc
tgcatcgttgtggattggggaaagggaggtgcgcttggccgcgctgccgccctgatcgct
ctggtacgcaaacgcggcctggacgtccccattctcattctggtgcgccgcaagcgcctg
gaggatatcccggtcgaagtcctgaacgacgtggacggctatgtttttcttgcagaagaa
acgcctgagttcatcgccaagaacttagttggacggttacgtaactacgccgagacgctg
aagactccattcttcggcgctttggtggactatgccgaggaagggaaccagttgtggacc
tgcccgggccataatggcggcatattctatggccgcagtccgatcggacggatcttcgtc
gagcatctcggcgaggcagtgttccgcgacgacctcgataactcggtgctcgatcttggt
gacctattgacgcacgaaggaccagccctcgccgcgcaacgggaagccgcgcggatcttc
ggtgccgaacggacctatttcgtgctcaacggtacctccacctcgaataagatcgcattg
caggcgctggtggccgaaggtgacctggtgctgtttgaccgtaacaatcacaaggccgct
caccacggtgcgctgtttctgggcggcggcattccagtctacctggagaccgaccgtaac
gcctatggcctgatcggaccgatcgatgccgaggcactggacgagacgcgcatccgcgaa
tgtattcgttgccaccctctggtcaccgaccccgacgcgtggcagcgcccgcgacccttt
cgggtggcagtgatcgagcagtgtacctacgatggcaccatcatcagcgccgaactgatc
cttcagaagctgggcccactctgcgactatatcgtcttcgatgaggcatgggcgggcttt
atgaagttccacccgctctatcggggccgctacgccatgggcctgcgcggcctgaatgaa
acgcagcctggtattatcgccacccagtctgcgcacaagcaacttgccggcctgtcgcag
acctcacagatccacgttcgcgatcgtcacatcgcggaccaaccgcgtcggctggggcac
cggcgctttaacgaaatgtttctgctgcatgccagcacctcgccattctacccgctgttt
gcctcgctggatgtcggcgcccacatgatgaagggacggcagggcgaggtgctatgggac
gataccatccggttgggcatcgagctgcgcaagaaaatgcgggcgatccggcgcgaattc
gcggaaaaagagaccgatgcggcgcgacgttggttttttgagccgttcgtgcccgaggtg
gtcatgtggcgcggcgacggggaagtcgcggtgcccacaccctgggaacaggtgccgact
gacgacctcgccacggatccgcaatattggctgctcaaccctggagacgcgtggcacggc
ttcgcgcacgtggcgccaggctatgccatgaccgaccctaacaagctgacgctgctgacc
cccggcatcgaccggcagaccagcgagtatcaagcgcatggcgtgccggccccggtgctg
gcggaatacctgcgcgagaatcgcattgtcgcggaaaagaacgacctgcacagcatcctg
ttcttgctcacccccggcgttgagtcgagcaaggccggcacgctgttgagctggctggtc
accttcaaaaagctgcacgacgacaacgcgccgctgctggaggttatgcctgagctggta
cgccgccgcagcccgcgctatgatggggtcggtctgcgtgacctgtgcgcggaaatgcat
ggcttctaccgcgaccgccagctcggccggttgcagcggctgcagttccgcaagcgccac
ttccccacgatcgcgatgaagccggacgaggcagtgcgccagctggtgcgcaacaacgtc
gattacctgcctatcgactgcatctccgggcgaatcgccgcgacgttgatgttggtctat
cctcccggcatcgccaccattgtcccgggcgagcgcctggacgagcgcgcccagccgatg
atcgagtatctgcgcgtgttcgagtgtgccgccaacctgttccccggcttcgagacggaa
attcagggtgtgtaccgggagcacgaggcaaacggctcgatgcgattttatacttacgtg
gtgcgcgaatag
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