Rhodovastum atsumiense: RHOA_6011
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Entry
RHOA_6011 CDS
T08162
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03030
DNA replication
rap03430
Mismatch repair
rap03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RHOA_6011 (dnaE)
03430 Mismatch repair
RHOA_6011 (dnaE)
03440 Homologous recombination
RHOA_6011 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rap03032
]
RHOA_6011 (dnaE)
03400 DNA repair and recombination proteins [BR:
rap03400
]
RHOA_6011 (dnaE)
Enzymes [BR:
rap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RHOA_6011 (dnaE)
DNA replication proteins [BR:
rap03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RHOA_6011 (dnaE)
DNA repair and recombination proteins [BR:
rap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RHOA_6011 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RskA_C
tRNA_anti_2
T2SSK
Motif
Other DBs
NCBI-ProteinID:
CAH2604831
LinkDB
All DBs
Position
RHOA:complement(6196834..6200253)
Genome browser
AA seq
1139 aa
AA seq
DB search
MPHADFVHLRVHSAYSLSEGAIKADKLAVLAKEALMPAVAITDSGNMFGALEFSQYCSGK
GVQPIIGCQIAITREDNPRLPPDPVVLLAQNAEGYANLQRLSSAGFMETDPSLKPQLALS
RVCERADGLILLTGGTNGPIARLLAEGQKGEAERLLARLTEAFPDRTVMELHRHGLPVER
AIEPGLIALADAAGVPLVATNDCFFAKPEMYEAHDALLCIAEGRLLSERDRRRVTPEHWF
KPAKVMRALFADLPEACDNTLAIARRCAVMAETRKPLLPVCPKVRPGRTEEETVRAMATE
GLERRLDAMRADDETRTRYRERLAYELDVIAKMGFPGYFLIVADFIQWAKAHGIPVGPGR
GSGAGSVAAWALTITDLDPLRFHLLFERFLNPERVSMPDFDIDFCQDRRDEVITYVRGEY
GADRVAQIITFGKLQARAAVRDVGRVLGLPFGQVNKVAELIPNNPAKPVTLQQAIDGEPK
LQQMRQDDEAVRRLLEIALQVEGLYRHASTHAAGVVIGDRTLTELVPIYRDPKSDFLVTQ
FSMKYVEQAGLVKFDFLGLTTLTILQRAVGFLHARGIEVDLAHLPLDDAPTYDMLQRGDA
GGVFQFESQGMRDVLRQMRPDRFEDLIAAVALYRPGPMANIPAYCQRKQGEKWEAPHPEI
RDILEETYGIMVYQEQVMQIAQKMAGYSLGGADLLRRAMGKKIRAEMEKQREIFVTGSTG
RGIPAEKAEEVFDLMAKFADYGFNKSHAAAYALVAYQTAWLKANHPVAFLAACMSLAINN
TDKLAALRQEATRLGIRVLPPDINRSGPDFTLEDDAEGKLCIRYALAAVKKVGMAAMQAV
VAARGDRDFADLADFAARIDPKHLNRMQLENLVRAGAFDSLDKVRARVFGAAEMILRRAQ
STAEERDSGQIGLFGGGGKAERLRLPDVAEWDPMDRLGYEADAIGFHLTAHPLDAYAAAL
RRLGAVPSNQLEQRAQAGAARVKVAGTVIGSKERITRTGSRMAWIRLSDGGGSYEVTFFS
EVLARGRELLAAGSAVLVTADIRLEGEALRITAHDVAPLDAAAAQAGAGMRVWLSETGAV
PHIRALLEREGKGKGRVVLVPRLDDSQDVEITLPGGFNVNPRLSQAMKGVAGVERVEDL
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgccgcacgctgatttcgttcacctccgggtccattccgcctattcgctcagcgagggc
gcgatcaaggccgacaagctcgccgtgctcgccaaggaggcgttgatgccggcggtggcg
atcaccgattccggcaacatgttcggcgcgctggagttttcccagtactgctcgggcaag
ggcgtccagccgatcatcggttgccagatcgccatcacccgcgaggacaacccgcgcctg
ccgccggacccggtcgtgctgctggcccagaatgccgagggctatgccaatctgcagcgc
ctgtcctcggccggcttcatggagaccgatcccagcctgaagccgcaattggcgctctcg
cgcgtatgcgagcgcgcggatgggctgatcctgttgaccggcggcaccaacggcccgatc
gcgcggctgctcgccgagggccagaagggcgaggccgaacgcctgctcgcccggctgacc
gaagccttccccgaccgcacggtgatggaactgcaccggcacggcctgccggtcgagcgt
gccatcgagccgggcctgatcgcgctggccgatgccgcgggcgtgccgctggtcgccacc
aacgattgcttcttcgccaagcccgagatgtacgaggcgcatgacgcgctgctctgcatc
gccgagggccggctgttgtccgagcgcgaccgtcgccgcgtcaccccggaacactggttc
aagccggccaaggtgatgcgggcgctgttcgccgacctgccggaagcctgcgacaacacg
ctcgccatcgcccggcgttgcgcggtgatggcggagacgcgcaagccgctgctgccggtc
tgcccgaaggtccgtcccggccgcaccgaggaagagacggtgcgggccatggccaccgag
gggctggaacggcggctcgatgccatgcgggccgacgatgaaacccgcacgcgctatcgc
gagcgcctggcctatgagctcgacgtcatcgccaagatgggcttcccgggctacttcctg
atcgtcgccgacttcatccagtgggcgaaggcgcacggcattccggtggggccggggcgc
ggttccggtgccggctcggtcgccgcctgggcgctgaccatcaccgacctcgatccgctg
cgcttccatctgctgttcgagcggttcctcaacccggaacgcgtgtcgatgccggacttc
gacatcgacttctgccaggaccgccgcgacgaggtgatcacctatgtgcgcggcgagtac
ggcgccgatcgtgtcgcccagatcatcaccttcggaaagctgcaggcgcgcgcggcggtg
cgtgacgtcgggcgtgtgctcggcctgccattcggccaggtcaacaaggtcgccgagctg
atcccgaacaacccggccaagccggtgacgctgcagcaggccatcgacggcgagccgaag
ctgcagcagatgcgccaggacgacgaagcggtgcgccgcctgctggaaatcgcgctgcag
gtcgaggggctataccgtcacgccagcacccatgcggcgggcgtggtgatcggtgaccgc
acgctgaccgagctggtgccgatctaccgcgatccgaaatccgatttcctggtcacgcaa
ttctccatgaaatacgtggagcaggcggggctggtgaagttcgacttcctcgggctgacg
acgctgaccatcctgcagcgggcggtggggttcctgcatgcgcgcggcatcgaggtcgat
ctggcgcatctgccactcgatgacgcgccgacctacgacatgctgcagcgtggcgatgcc
ggcggggtgttccagttcgaaagccagggcatgcgggacgtgctgcggcagatgcgtccc
gaccggttcgaggacctgatcgccgcggtggcgctgtaccgtcccggcccgatggccaat
atcccggcctattgccagcgcaagcagggcgagaaatgggaggcgccgcacccggagatc
cgcgacatcctggaagagacctacggtatcatggtctaccaggaacaggtgatgcagatc
gcccagaagatggcggggtacagcctcggcggcgccgacctgctgcgccgcgccatgggc
aagaagatccgcgccgagatggagaagcagcgcgagatcttcgtcaccggctccaccggg
cgcggcattccggcggagaaggccgaagaggtgttcgacctcatggccaagttcgccgac
tatggcttcaacaaatcccacgcggctgcctatgcgctggtggcctatcaaacggcctgg
ctgaaggcgaaccatccggtggccttcctggccgcttgcatgtcgcttgccatcaacaac
accgacaagctggcggcgctgcggcaggaagcgacacggctgggcattcgcgttttgccg
cccgacatcaaccgctccggccctgacttcacgctggaggatgatgccgagggcaagctg
tgcatccgctatgcgctggcggcggtgaagaaggtcggcatggcggcgatgcaggcggtg
gtggccgcgcgcggcgaccgtgacttcgctgatctggcggattttgccgcccgcatcgac
ccgaagcacctgaaccggatgcagttggaaaacctggtgcgggccggtgccttcgacagc
ctggacaaggttcgtgcccgtgtctttggcgctgccgagatgatcctgcgccgggcgcag
tccacggcggaggagcgtgacagcggccagatcggcctgttcggcggtggcggcaaggcc
gagcgcctgcgcctgccggacgtagcggaatgggatccgatggaccggctcggctacgag
gccgatgcgattggtttccatctgaccgcgcatccgctggatgcttatgcggcggcgctg
cggcgcctgggggcggtgccgagcaatcagttggaacagcgggctcaggccggggcggcg
cgggtcaaggtggctgggaccgtcatcggcagcaaggagcgcatcacccgcaccggcagc
cgcatggcgtggatcaggctatcggatggtggcggctcctacgaagtcaccttcttctcc
gaggtattggcacgggggagggagttgcttgcggccggcagtgccgtgctggtgacggcg
gatattcgcctggaaggcgaggcattacggatcaccgcgcatgatgtggcgccgttggat
gccgccgcggcgcaggcgggggcggggatgcgggtctggctgagcgagacgggggccgtg
ccgcatatccgggcgctgctggagcgcgagggcaagggcaagggccgggtcgtgctggtg
ccaaggctcgatgattcgcaggacgtggagatcaccttgccgggtggcttcaacgtcaat
ccgcgtctgtcccaggcgatgaagggtgtcgctggcgtcgaacgggtcgaggatctttag
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