Rhodovastum atsumiense: RHOA_6017
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Entry
RHOA_6017 CDS
T08162
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rap
Rhodovastum atsumiense
Pathway
rap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHOA_6017 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rap03019
]
RHOA_6017 (rnj)
Messenger RNA biogenesis [BR:
rap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHOA_6017 (rnj)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAH2604837
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Position
RHOA:complement(6204552..6206198)
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AA seq
548 aa
AA seq
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MTRANSDLAFVPLGGTGEIGMNLNLYRCGEAWLAVDCGIGFGGAANPEVDIMLPDPAFIA
ERRDRLVGLVLTHAHEDHLGGVAHLWRSLRCPVFATPFAASVLRRKLGEAQLISEVPLRV
IPPGGSFTLEPFRLQFINMAHSIPEAQALVIRTHVGTVLHTGDWKLDPDPLVGGRTDEAA
LAKLGEEGVLAMICDSTNALVEGHSGSEADVREAMTALVRSLRGRVAVTCFASNVARLET
IALAAQAAGRTVALVGRSLRNIDAAARECGYLKEVPPFATEDEAADIPDDNLLLIVTGSQ
GEPRSALARIALDQHPRIELGEGDTVVFSSRVIPGNERAIITVQDNLVRRGVRLMTDADH
MIHVSGHPARDELRRLYRLVRPPVAVPVHGEWRHLTAHAELAQAAGIGSVLLEDGDILNL
APGRVEVVDSAPVGRLVLDGNRLVPMTGGVMGARRRMLFNGVAIASIAVDEAGRLRGRPR
LTAPGLFETEDPEMLRIADEMAESVADLPAPIRRDDATLQEAAKTALRRALGKRLQKRPL
VDVLLLRI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgggcaaactcggatcttgccttcgtgccgctgggcggcaccggcgagatcggc
atgaacctgaatctatatcgctgtggcgaggcatggctcgcggtggattgcggcatcggc
ttcggcggggccgccaatcccgaggtcgacatcatgctgcccgacccggcgttcatcgcc
gagcgccgggaccggctggtcgggctggtgctgacccatgcgcatgaagaccatctcggc
ggggtggcgcatctgtggcggtcgctgcgctgcccggtcttcgcgaccccgttcgccgct
tcggtgctgcggcgcaagctcggggaggcgcaacttatcagcgaagtgccgctgcgggtg
attccgcccggcggcagcttcacgctcgagccgttccggctgcaattcatcaacatggcg
cactcgatccccgaggcgcaggcgctggtgatccgcacccatgtcggcacggtgctgcac
accggcgactggaagctcgatcccgacccgctggtcggcgggcgcaccgacgaggcggcg
ctggcgaagctgggcgaggaaggtgtcctcgccatgatctgcgattccaccaatgccctg
gtggaaggccattccggctccgaggccgatgtgcgcgaggcgatgacggcgctggtccgc
tctctgcgcgggcgggtcgcggtcacctgcttcgccagcaacgtcgcccggctggaaacc
atcgccctggccgcacaggcggccgggcggacggtggccctggttggacgctcgctgcgc
aacatcgatgccgccgcgcgggaatgcggctatctcaaagaggtgccgcccttcgccacc
gaagacgaagccgccgacatccccgacgacaacctgctgctgatcgtcaccggcagccag
ggcgagccgcgttcggcgctggcgcgcatcgcgctcgaccagcacccgcgcatcgagctg
ggcgaaggcgacacggtggtgttttccagccgggtcattcccggcaacgaacgcgccatc
atcacggtgcaggacaacctggtgcgccgcggcgtgcggctgatgaccgacgccgaccac
atgattcacgtctccggccatcccgcacgtgacgagttgcgccggctgtaccggctggtc
cgcccgccggtcgccgtgccggtccacggcgaatggcggcacctgaccgcgcacgccgaa
ctggcgcaggcggccggcatcggctcggtgctgctggaggatggtgacatcctcaacctc
gcccccggccgggtggaggtggtggacagcgccccggtcgggcggctggtgctggacggc
aaccggctggtgccgatgaccggcggggtgatgggcgcgcgccggcgcatgctgttcaac
ggcgtcgccattgcctcgatcgcggtggacgaagcaggccggttgcgtggtcgcccacgc
ctcaccgccccgggcctgttcgagaccgaggatccggaaatgctgcgcatcgccgacgaa
atggccgaatcggtcgccgatctgccggcaccgattcgccgcgacgatgccacgttgcag
gaagcggcgaagaccgcgctgcgccgcgcgctcggcaagcggctgcagaagcgtccgctg
gtggatgtgttgctgctgcggatctga
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