KEGG   Rhodovastum atsumiense: RHOA_6017
Entry
RHOA_6017         CDS       T08162                                 
Symbol
rnj
Name
(GenBank) Ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
rap  Rhodovastum atsumiense
Pathway
rap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHOA_6017 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rap03019]
    RHOA_6017 (rnj)
Messenger RNA biogenesis [BR:rap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RHOA_6017 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B_2 RMMBL Lactamase_B RNase_J_C Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: CAH2604837
LinkDB
Position
RHOA:complement(6204552..6206198)
AA seq 548 aa
MTRANSDLAFVPLGGTGEIGMNLNLYRCGEAWLAVDCGIGFGGAANPEVDIMLPDPAFIA
ERRDRLVGLVLTHAHEDHLGGVAHLWRSLRCPVFATPFAASVLRRKLGEAQLISEVPLRV
IPPGGSFTLEPFRLQFINMAHSIPEAQALVIRTHVGTVLHTGDWKLDPDPLVGGRTDEAA
LAKLGEEGVLAMICDSTNALVEGHSGSEADVREAMTALVRSLRGRVAVTCFASNVARLET
IALAAQAAGRTVALVGRSLRNIDAAARECGYLKEVPPFATEDEAADIPDDNLLLIVTGSQ
GEPRSALARIALDQHPRIELGEGDTVVFSSRVIPGNERAIITVQDNLVRRGVRLMTDADH
MIHVSGHPARDELRRLYRLVRPPVAVPVHGEWRHLTAHAELAQAAGIGSVLLEDGDILNL
APGRVEVVDSAPVGRLVLDGNRLVPMTGGVMGARRRMLFNGVAIASIAVDEAGRLRGRPR
LTAPGLFETEDPEMLRIADEMAESVADLPAPIRRDDATLQEAAKTALRRALGKRLQKRPL
VDVLLLRI
NT seq 1647 nt   +upstreamnt  +downstreamnt
atgacgcgggcaaactcggatcttgccttcgtgccgctgggcggcaccggcgagatcggc
atgaacctgaatctatatcgctgtggcgaggcatggctcgcggtggattgcggcatcggc
ttcggcggggccgccaatcccgaggtcgacatcatgctgcccgacccggcgttcatcgcc
gagcgccgggaccggctggtcgggctggtgctgacccatgcgcatgaagaccatctcggc
ggggtggcgcatctgtggcggtcgctgcgctgcccggtcttcgcgaccccgttcgccgct
tcggtgctgcggcgcaagctcggggaggcgcaacttatcagcgaagtgccgctgcgggtg
attccgcccggcggcagcttcacgctcgagccgttccggctgcaattcatcaacatggcg
cactcgatccccgaggcgcaggcgctggtgatccgcacccatgtcggcacggtgctgcac
accggcgactggaagctcgatcccgacccgctggtcggcgggcgcaccgacgaggcggcg
ctggcgaagctgggcgaggaaggtgtcctcgccatgatctgcgattccaccaatgccctg
gtggaaggccattccggctccgaggccgatgtgcgcgaggcgatgacggcgctggtccgc
tctctgcgcgggcgggtcgcggtcacctgcttcgccagcaacgtcgcccggctggaaacc
atcgccctggccgcacaggcggccgggcggacggtggccctggttggacgctcgctgcgc
aacatcgatgccgccgcgcgggaatgcggctatctcaaagaggtgccgcccttcgccacc
gaagacgaagccgccgacatccccgacgacaacctgctgctgatcgtcaccggcagccag
ggcgagccgcgttcggcgctggcgcgcatcgcgctcgaccagcacccgcgcatcgagctg
ggcgaaggcgacacggtggtgttttccagccgggtcattcccggcaacgaacgcgccatc
atcacggtgcaggacaacctggtgcgccgcggcgtgcggctgatgaccgacgccgaccac
atgattcacgtctccggccatcccgcacgtgacgagttgcgccggctgtaccggctggtc
cgcccgccggtcgccgtgccggtccacggcgaatggcggcacctgaccgcgcacgccgaa
ctggcgcaggcggccggcatcggctcggtgctgctggaggatggtgacatcctcaacctc
gcccccggccgggtggaggtggtggacagcgccccggtcgggcggctggtgctggacggc
aaccggctggtgccgatgaccggcggggtgatgggcgcgcgccggcgcatgctgttcaac
ggcgtcgccattgcctcgatcgcggtggacgaagcaggccggttgcgtggtcgcccacgc
ctcaccgccccgggcctgttcgagaccgaggatccggaaatgctgcgcatcgccgacgaa
atggccgaatcggtcgccgatctgccggcaccgattcgccgcgacgatgccacgttgcag
gaagcggcgaagaccgcgctgcgccgcgcgctcggcaagcggctgcagaagcgtccgctg
gtggatgtgttgctgctgcggatctga

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