Rhodovastum atsumiense: RHOA_6107
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Entry
RHOA_6107 CDS
T08162
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
rap
Rhodovastum atsumiense
Pathway
rap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rap00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHOA_6107 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rap03021
]
RHOA_6107 (rpoD)
Transcription machinery [BR:
rap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHOA_6107 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DASH_Hsk3
Motif
Other DBs
NCBI-ProteinID:
CAH2604925
LinkDB
All DBs
Position
RHOA:complement(6305488..6307464)
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AA seq
658 aa
AA seq
DB search
MATKPAVQTDAATTDPDADTTLLDVQSAAVKRLIARGKERGYITFDELNAVLPPEQNSSE
QIEDVMANLNEMGIQVVEGEETEEGEGPAAKIKEADEGGDEEQAGNVDEESLGRTDDPVR
MYLREMGSVELLSREGEIAIAKRIEAGRDMMIGGLCESPLTFRAIIAWHDALKAGRMLLR
DIIDLEATQGGPANGGADAEAEVEGAEGAEPGDPDAEAAAFAPPADDEDGEDGEGAGLSL
SALEEKLKPEVLATFEEIESLYKKLYKLQQRRLESITSGEDVNQKNEKVYEKQREELVSK
VEQVRLHNNRIEELVTQLKQLNQRLTGLEGQLLRMAESCKVTRDDFLNQYRGNELDPNWM
EKVGRLPGKAWKNFVAKHGTDIPVVRAQIAAVANEAGLPISEFRRVYATVSRGERDSARA
KKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWI
RQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEELAEKLGMPLEKVR
KVLKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPLDAAIQANLREATTRVLSSLTPRE
ERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDD
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaagcccgccgtgcagaccgatgccgccacgaccgacccggatgcggacacc
accctgctcgacgtccagtcggccgcggtgaagcggctgatcgcacgcggcaaggagcgc
ggctacatcaccttcgacgagctcaacgccgtgctgccgcccgagcagaacagctccgag
cagatcgaggacgtgatggccaatctcaacgagatgggcatccaggtcgtcgaaggcgag
gagaccgaggagggcgaggggcccgcggccaagatcaaggaagccgacgagggcggcgac
gaggagcaggccggcaacgtcgacgaggaaagcctcggccgcaccgacgacccggtccgc
atgtacctgcgcgagatgggcagcgtcgagctgctgtcccgcgagggcgagatcgccatc
gccaagcgcatcgaggccggccgcgacatgatgatcggcgggctgtgcgagagcccgctg
accttccgcgccatcatcgcttggcacgacgcgctcaaggccgggcgcatgctgctgcgt
gacatcatcgacctggaagccacccagggcggcccggccaatggcggcgccgacgccgag
gccgaagtcgagggggcggagggagccgagcccggcgaccccgatgccgaggccgccgcc
ttcgccccgcccgccgacgacgaggacggcgaggacggcgagggcgccggcctgtcgctc
tcggcgctggaggagaagctgaagcccgaggtgctcgccaccttcgaggagatcgagagc
ctctacaagaagctctacaagctgcagcagaggcggctggaaagcatcacctccggcgag
gacgtcaaccagaagaacgagaaggtctacgaaaagcagcgcgaggagctggtctccaag
gttgagcaggtccgcctgcacaacaaccgcatcgaggaactggtcacccagctcaagcag
ctcaaccagcgcctgaccgggctggaaggccagttgctgcgcatggccgagagctgcaag
gtcacgcgcgacgacttcctcaaccagtaccgcggcaacgagctcgacccgaactggatg
gaaaaggtcggccggctgccgggcaaggcgtggaagaacttcgtggccaagcacggcacg
gacatccccgtggtccgcgcccagatcgccgccgtcgccaatgaagcggggctgccgatc
agcgagttccgccgcgtctacgccaccgtctcgcgcggcgagcgcgattccgcgcgcgcc
aagaaggagatgatcgaggccaacctgcggttggtgatctcgatcgccaagaagtacacg
aaccgcggcctgcaattcctggacctgatccaggaaggcaacatcgggctgatgaaggcg
gtggacaagttcgagtaccggcgcggctacaagttcagcacctatgccacgtggtggatc
cgccaggcgatcacccgcagcatcgccgaccaggcgcgcaccatccgcatccccgtgcac
atgatcgagacgatcaacaagctggtgcgcacctcgcgccagatgctgcacgagatcggc
cgcgagccggcgcccgaggaactggccgagaagctcggcatgccgctcgagaaggtgcgc
aaggtcctcaagatcgccaaggagccgatcagcctggagacgccgatcggcgacgaggag
gacagccatctcggcgacttcatcgaggacaagaacgcggtcatcccgctcgatgccgcc
atccaggccaatctgcgcgaggccaccacccgggtgctgtccagcctgaccccgcgcgag
gaacgcgtgctgcgcatgcgcttcggcatcggcatgaacaccgaccatacgcttgaggaa
gtcggccagcagttcaacgtgacccgcgagcgcatccgccagatcgaggccaaggccctg
cgcaagctcaagcaccccagccgcagccgcaagctgcgcagcttcctcgacgactga
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