Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_0522
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Entry
Rahaq2_0522 CDS
T01770
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rahaq2_0522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raq03019
]
Rahaq2_0522
03009 Ribosome biogenesis [BR:
raq03009
]
Rahaq2_0522
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rahaq2_0522
Messenger RNA biogenesis [BR:
raq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rahaq2_0522
Ribosome biogenesis [BR:
raq03009
]
Prokaryotic type
rRNA helicases
Rahaq2_0522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
UTP25_NTPase-like
Cas3-like_C_2
AAA_19
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AEX50452
UniProt:
H2ISY3
LinkDB
All DBs
Position
531448..533373
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AA seq
641 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
QHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRALLAKLQPAEELDVE
TLAAALLKMAQGERPLIVAADPVFKSRPPRREFEERGDRGDRGDRRDRPARSNDRPARDG
DSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEILSHFTRTRILNKPMNMQLIGDAVPQAPRRDRPAGAGGERRGNGAPRPFNGER
REGGRGTGGAPRTFSGDRREGSSAAGDRRPPSRAPRRTSDV
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgactgatttgggctacgaaaaaccttcaccaatccaggctgagtgtattcctcac
ctgttaaacggccgcgacgttctgggcatggctcagacaggttccggtaaaacagccgca
ttctctttaccgctgctgcacaacattgatgcttcactgaaagcaccacaaattcttgtt
ctggcaccgacccgcgaactggcggttcaggttgctgaagcaatgactgatttctctaaa
cacatgcatggcgtgaatgtggttgccctttatggcggccagcgctatgacgtccagttg
cgtgctctgcgtcagggaccacaagttgttgtgggtaccccggggcgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggcctggtgctggacgaagctgat
gaaatgctgcgtatgggcttcatcgaagacgtcgaaactatcatggcgcagatcccggct
caacatcagaccgccttgttctctgcaaccatgccagaagctattcgccgcattacccgt
cgcttcatgaaagatcctcaggaagtgcgtatccagtcaagcgtgaccacgcgtcctgac
atcagccagagctactggtctgtatacggtctgcgtaaaaacgaagcgctggtgcgtttc
ctggaagcagaagattttgatgcagcgatcatcttcgtccgtactaaaaacgcgacgctg
gaagtggctgaagcgctggaacgtagcggctacagcagcgctgcactgaacggtgacatg
aaccaggcactgcgcgagcagactctggagcgtctgaaagatggccgtctggacattctg
atcgcaaccgacgtggcagcacgtggtctcgatgtagaacgtatcagcctggttgttaac
tacgacatcccgatggactcagaatcttacgttcaccgtatcggtcgtaccggtcgtgct
ggccgtgcaggtcgcgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaac
attgaacgcaccatgaagctgaccattccggaagttgaaatcccaactgcagaagttctg
ggcgaacgtcgtctggctaagtttgcagcgaaagttcagcaacaactggaaagcagcgat
ctggatcaataccgtgcgctgctggcgaaactgcaaccagcagaagagctggatgttgaa
acactggcggcggcactgttgaaaatggcacagggcgaacgtcctctgattgttgcagcg
gatccggtcttcaaaagccgcccaccacgtcgtgaattcgaagaacgtggcgaccgcggt
gaccgtggcgatcgtcgtgaccgtccggctcgtagcaatgaccgtcctgcacgtgatggc
gacagcccgcgtcgtgaacgtcgtgatgctggcgaaatggagctgtaccgtatcgaagtg
ggtcgtgatgacggcgtagaagttcgtcatatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttacatcggtaacattaagctgttcggtacgcactccactatcgaattg
ccgaaaggtatgccgggcgagatcctgtctcacttcacccgtacccgtatcctgaataaa
ccgatgaacatgcagttgatcggtgatgcggtgccacaggcgccacgtcgtgatcgcccg
gccggtgctggcggtgagcgccgtggtaacggtgctccgcgtccattcaacggcgaacgt
cgtgaaggtggtcgtggtaccggtggtgctccacgtactttcagtggtgaccgtcgcgaa
ggttcgtcagccgcgggtgatcgtcgtccgccaagccgcgcaccacgtcgtacttctgac
gtataa
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