Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_0941
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Entry
Rahaq2_0941 CDS
T01770
Name
(GenBank) DNA-directed DNA polymerase III PolC
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03030
DNA replication
raq03430
Mismatch repair
raq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rahaq2_0941
03430 Mismatch repair
Rahaq2_0941
03440 Homologous recombination
Rahaq2_0941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raq03032
]
Rahaq2_0941
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_0941
Enzymes [BR:
raq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Rahaq2_0941
DNA replication proteins [BR:
raq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Rahaq2_0941
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Rahaq2_0941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AEX50841
UniProt:
H2IXN8
LinkDB
All DBs
Position
984240..987722
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGA
GIKPIIGADLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAGPIVDLEW
LAELNEGLILLSGARMGDVGKFLTRGNDLQVSQCLDFYQQYFPDRYYLELIRTGRAEEEN
YLHAAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYM
RSEDEMCELFEDLPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVEKSKIGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNNVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEAPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEEGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLSDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVMPWPEQTVLDGERETLGLY
LTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTEALEKFQHLLEKDRILIATGQVSFDDFSGGLKMMARDIMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRENARARLRFGASWRVTPTD
KLLLDLRGLVGTEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcatctgcgtgtacatagcgactattccatggtggatggg
cttgcgaaggtcggtccgctggtgaaatgcgcagcgtcactcggcatgcctgctttggcg
attaccgatttcactaacttgtgcggactggttaaattttacggtgcggcacatggtgcg
ggtataaaaccgattatcggtgcagacctgaatgttcaaagcgaaatactgggtgatgaa
ctggcacagctgacggttctggcgatgaataatcagggctaccagaacctgaccttattg
atttccagagcgtatcagcgcggttacggcgcagccgggccgatcgtcgacctcgaatgg
ctggcagaactgaatgaaggtttgattctgctttccggcgcgaggatgggtgatgtcggt
aaatttctgacccgcggaaatgacttacaagtcagccagtgcctggatttctaccagcag
tatttccccgatcgttattatctcgaattgatccgtaccggccgtgcagaagaagaaaac
tatctgcatgcggctgtcgcactggcgacagagcgcggtttgccggtggtggcaaccaac
gacgtgcgctttatggtgccgactgactttgatgcccatgagattcgtgttgcgatccac
gatggtttcacgctggatgaccctaaacgtccgcgcaattacacttcgcagcaatatatg
cgcagtgaagatgagatgtgcgagctgtttgaggatttgcctgaagcgttgcaaaacagc
gtggaaattgccaaacgctgtaacgtcaccatccgtctgggcgaatattttctgccgcag
ttcccgaccggtgatatgaccactgaagattttctggtcgaaaaatcaaaaatcgggctg
gaagagcgccttgagtttttattcccggatccggaagttcgtgcacaaagacgccctgaa
tatgacgagcgtctggacattgaacttaaagttatcaaccagatgggttttcccggttac
ttcctgatcgtaatggagttcatccagtggtcgaaagataacaacgtacctgtcgggccg
ggacgtggttccggtgcaggttctctggtggcatatgccctgaaaattaccgatctggat
ccgctcgaatttgacttgctgttcgaacgtttccttaaccctgaacgtgtttccatgccc
gactttgatgtcgacttctgtatggaaaaacgcgaccgggttatcgatcacgtttcagaa
atgtatggccgcgaagctgtttcgcagatcattactttcggaacgatggctgccaaagcg
gttatccgcgatgtgggccgtgttctggggcatccttacggcttcgttgaccgcatttcc
aaactggtgccacccgatccgggcatgacgcttgaaaaagcgtttgctgcagagccacag
ttgcccgaaatctatgaggctgacgaagaggttaagtctctcatcgacatggcgcgtcag
cttgaaggtgtcacccgtaacgccgggaaacacgccggtggcgtagtgattgcgcccacc
aaaatcaccgactttgcgccactttattgtgatgcggaaggtaaccatccggtcacgcag
tttgataaaaatgatgtggaatatgcgggtctggtgaagttcgacttccttggcctgcgt
acgctgaccatcatcgactgggcgctggagatgatcaacgcccgccgcgcgaaagccggt
gaggcaccgctggatattgcggccatcccgctggatgacaaaaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcacgcggcatgaaagatttgatc
aaacgcctcaagcctgacagtttcgaagatatgatcgctctggtggcgctgttccgcccg
ggccctttacagtccggcatggtggataactttattgaccgtaaacacggtcgtgaagag
atttcttacccggatatccagtggcagcatgaatccctgaaacctgtgctggagccgacg
tacggcatcatcctgtatcaggaacaggttatgcagattgcgcaggttctggcaggttac
tcgctgggtggtgcagacatgctccgccgtgcgatgggtaagaaaaacccggtggagatg
gccaagcagcgcggcggttttgaagagggggcaaaatctcggggtatcgacggcgaactg
gcgattaaaatcttcgacctggtagagaaatttgccggttacggttttaacaaatctcac
tcagcagcttatgctttagtgtcgtatcagacgctgtggctgaaagcgcactatccggcg
gagttcatggcggcggtaatgacggctgatatggataacactgaaaaagtggtcgggctg
gtggatgaatgctggcgtatggggctgaaaatcctgccgcctgatatcaacagcggcctg
tatcatttccacgtgaacgatgaaggcgaaattgtttacggcattggcgcgattaaaggc
gtgggtgaaggcccgattgaagccattattgaagcgcgtaacgaaggcggctatttcaaa
gagctgtttgatttgtgcgcgcgtgctgacgtcaaaaaactgaataaacgcattctcgaa
aagctgatcatgtccggggcgtttgaccgtctgggaccacaccgtgccgcgttgatgagt
tccttaagcgacgcattgaaagccgctgatcaacatgccaaagccgaggcgattggtcag
gttgatatgtttggtgtgctggcagaagcacctgagcaggttgagaaatcttacgcgaat
gtgatgccatggccggaacaaacggttctggatggcgaacgtgagacgctcggcttgtat
ctgaccggccatccgatcacgcaatatttgaaagaaattgaacgttatggcggcggccag
cgtttgaaagatatgcacccgacggaacggggcaaaatgaccgtcgcggtcgggcttgtc
cttgccgcacgtgtcatggtcaccaagcggggtaaccgcattgggatctgtacccttgat
gaccgttccggtcgtctggaagtcatgttgttcactgaagcattggaaaaattccagcat
ttattggaaaaagaccgtatccttatcgccacaggacaggtcagctttgatgacttcagt
ggcgggcttaaaatgatggcccgcgatataatggacatcagtgaagcacgggaaaaatat
gctcgcggtcttgctatctcgctgactgacaggcaaattgatgaccagcttttgaaccgt
ctccgccaatcgttggaaccacatcgatcggggacgataccagtgcatctgtattaccaa
cgagaaaacgcaagagcccggctacgattcggggcgtcatggcgtgttacgccaacggac
aaactgttgctggatttgcgaggcctggtcggtactgagcaggtggaactggaatttgac
taa
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