Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_2072
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Entry
Rahaq2_2072 CDS
T01770
Name
(GenBank) DNA topoisomerase I, bacterial
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
raq03032
]
Rahaq2_2072
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_2072
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Rahaq2_2072
DNA replication proteins [BR:
raq03032
]
Prokaryotic type
DNA Topoisomerases
Rahaq2_2072
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Rahaq2_2072
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
MJ0874
DUF8617
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AEX51933
UniProt:
H2IX55
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All DBs
Position
2175044..2177641
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AA seq
865 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKTADSTEEKTKKKVK
KDEKTALVNRMGVDPYHGWAAQYEILPGKEKVVAELKALAEKADHIYLATDLDREGEAIA
WHLREVIGGDDKRFSRVVFNEITKNAIQNAFKEPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREKEIKAFVPEEYWELHADLLAKKETALQMEVTH
HLEKPFKPVNKEQTHAAVSLLEKARYTVVDREDKPTSSKPGAPFITSTLQQAASTRLSFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVEMVRGYIGENFGDKYLPKAPLQYSNKEN
SQEAHEAIRPSDVAVTSEQLKDMEADAQRLYQLIWRQFVACQMTPAQYDSTTLTVKAGDY
SLRAKGRTLRFDGWTKVMPALRKGDEDRTLPAIEVGTDLELQQLLPTQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVHVENRRFYAEKMGEIVTDRLEDNFRELMNY
DFTARMEDGLDQVANNKAEWKAVLDEFFTEFSKQLETAEKDPEEGGMRPNQMVLTSIECP
TCGRPMGIRTASTGVFLGCSGYALPPKERCKTTINLIADAEVLNILEGDEAETNALRAKR
RCVKCGTAMDSYLIDNQRKLHVCGNNPECDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMGCTNDECKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELKRFKDRLPEKLSYLADAPVADPEGNKSMVRFSRKTKQQYV
SSEKDGKATGWTAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagctctcgtaatagttgagtccccggcaaaagccaaaacgattaataaatat
ttaggaaatgactacgtggttaagtccagcgtcggtcatatccgtgatttaccgaccagt
ggatccgctgctaaaaagaccgccgactcaaccgaagaaaaaacaaagaaaaaagtaaaa
aaggatgagaaaaccgcgctggttaatcgcatgggcgtcgatccgtatcacggttgggca
gcacaatacgaaatacttccgggtaaagaaaaagttgtcgccgagttaaaagcgttagcg
gaaaaagctgaccacatctatctcgcaaccgaccttgaccgcgaaggagaggcgattgcc
tggcatttgcgggaagtgattggcggtgatgacaaacgtttcagccgcgttgtatttaac
gaaattaccaagaacgcgattcagaatgcctttaaagaacccggcgaactgaatatcgat
cgtgttaacgctcagcaggcgcgtcgtttcatggaccgcgtggtggggtatatggtttct
ccgctgttgtggaagaagattgcccgcggtttatccgcaggtcgtgttcagtccgtggcg
gtgcgtctggtggtagagcgcgagaaagaaatcaaagcgttcgtgccggaagaatactgg
gaattgcatgcggatttgctggcgaagaaagaaaccgcgctgcaaatggaagtcacgcat
catctcgaaaaaccgttcaaaccggttaataaagaacaaactcacgcggccgtttcactg
cttgagaaagcgcgttacaccgtggtggatcgtgaagacaaaccgaccagcagcaagcca
ggtgcgcctttcattacttccacgctgcaacaggcggccagtacgcgtttgagctttggc
gtgaagaaaaccatgatgatggcccagcgtctttacgaagccggtcacattacctatatg
cgtactgattccactaacctgagtcaggatgccgtggaaatggtgcgggggtatattggc
gagaatttcggtgataaatatctgccgaaagccccgctgcaatacagcaacaaagagaac
tctcaggaagcgcacgaagcgattcgtccttctgacgtggccgtgacttcagaacaactg
aaagatatggaagcggatgcgcagcgtctgtaccagttgatctggcgtcagttcgtggcc
tgtcagatgacaccggctcagtacgattccactacgctgacagtgaaagccggcgattat
tctttgcgcgccaaaggccgtacgctgcgttttgatggctggaccaaagtgatgccggcg
ttgcgcaaaggcgacgaagacagaaccttgcctgccatcgaagtgggaaccgatcttgaa
ctgcaacaactgttgccaactcagcatttcaccaagccgcctgcgcgtttcagcgaagcg
tcactggtgaaagaactggaaaaacgtggcattggccgcccgtctacttatgcgtcgatc
atttcgaccattcaggacaggggttatgtccatgttgagaaccgtcgcttctacgcggaa
aaaatgggtgaaattgttaccgatcgtctggaagataatttccgcgaactgatgaattac
gatttcaccgcacgtatggaagacgggctggatcaggtcgccaacaacaaggcggaatgg
aaagctgttctggacgaattcttcactgaattcagcaagcaactggaaaccgctgagaaa
gacccggaagaaggcggtatgcgcccgaatcagatggtgttgaccagtattgaatgcccg
acctgtgggcgtccgatggggatccgtaccgccagtaccggcgtgttcctcgggtgttcc
ggttatgccctgccgccgaaagaacgctgcaaaaccaccatcaacctgattgctgacgcc
gaagtgctgaacattctggaaggtgatgaagccgaaaccaatgcgctgcgtgcgaaacgc
cgttgcgtcaaatgcggcacagcgatggacagctatctcatcgataatcagcgtaaattg
catgtctgcggtaacaacccggaatgtgatggttatgaaatcgaagaaggtgagttccgt
atcaaggggtacgacggcccgatcgttgagtgcgagaaatgtggttctgaaatgcacctg
aaaatggggcgtttcggcaaatacatgggctgtaccaacgacgagtgcaaaaatacccgt
aagattttgcgaaacggtgatgtggcaccgccgaaagaagatccggttccgctgccggaa
ttgccgtgtgagaaatcagacgcgtatttcgtgttgcgtgacggtgcggcaggggtattc
ctggctgccaacactttccctaaatcgcgcgaaacccgtgcgccgctggtggaagaactg
aagcgcttcaaagatcgtttaccggaaaaactgagttatctggccgatgcgccggtggcg
gatccggaaggcaataaatcgatggtgcgtttcagccgtaaaaccaagcagcagtatgtg
tcttcagaaaaagacggcaaagccactggctggaccgccttctttgtcgacggtaagtgg
gtcgaaggcaaaaaataa
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