Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_2250
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Entry
Rahaq2_2250 CDS
T01770
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raq03019
]
Rahaq2_2250
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Rahaq2_2250
Messenger RNA biogenesis [BR:
raq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Rahaq2_2250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
NACHT
T2SSE
PhoH
ResIII
NTPase_1
SLFN-g3_helicase
AAA_16
AAA_30
SIMPL
Motif
Other DBs
NCBI-ProteinID:
AEX52106
UniProt:
H2IZB9
LinkDB
All DBs
Position
2389309..2393184
Genome browser
AA seq
1291 aa
AA seq
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MKSPLAALSAQLDGLMLRDRQRLQRRLQGARKIDKPEALDALGAEIQTAINESLKKVSAR
EASRPKISYPENLPVSQKKDDIYNAIRDHQVVIVAGETGSGKTTQIPKICMELGRGIKGV
IGHTQPRRLAARTVANRIADELDTTLGNTVGYKVRFNDQVSENTLVKLMTDGILLAEIQQ
DRMLMQYDTLIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPQRFSRHFNNA
PVIEVSGRTYPVDVRYRPIVDDADDVDRDQLQAIFDAVDELGRESMGDILIFMSGEREIR
DTADALNRLDLPHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVI
DPGTARISRYSFRTKVQRLPIEPVSQASANQRKGRCGRVSEGICIRLYSEQDFLSRPEFT
DPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELNAINNAVDGRYT
LTPLGRQLAQLPVDPRLARMVLEAQKNGCVREVMIITAALSIQDPRERPMDKQQASDEKH
RRFADKDSDFLAFVNLWDHLKVQQKELSSAQFRKLCRSDFLNYLRVREWQDIYTQLRQVV
KELGLPVNSEPAEYREVHCALLTGLLSHIGQKDVDKQEYTGARNARFAVFPGSGLFKKPP
KWVMVAELVETSRLWGRIAARIEPEWIEPLAKHLAKSSYSEPHWEKAQGAVMATEKVTLY
GLPIVAARRVNYGTIDPVVSRELFIRHALVEGDWQTRHAFFRANLRLRTEVEELEHKSRR
RDILVDDETLFLFYEQRIGQEVVSARHFDTWWKTQPQDSLNFEKSMLIKEGAGNISAHDY
PNFWHQGNLKLRVTYQFEPGTDADGVTVHIPLPLLNQVSEEGFDWQIPGIRRDLIMALIK
SLPKPVRRNFVPAPNYADALLGRIKPFEIPLLDAMEKELRKMSGVTVSREDWQWDQVPDH
LKMTFRIVDDKNKTLREGKDLTALKSGLKEQVQQTLSAVADDGIEQRDLHVWSFGTLPER
YEQKRGGYEVKAYPAIVDEKDSVAIRLFDSELEQQQAMLSGMRRLLLLNIPSPVKYLHEK
LPNKAKLGLYFNPYGKVLDLIDDCISCGIDKLIAESGGLVWREEDFAKLHEHVRANLNDT
VVQIAIQVEQILTTVFSINKRLKGRIDITMALALSDIKAQMSGLIYRGFVTQNGWKRLPD
TLRYLQGIERRMDKLAMDPHRDRAQMMKVENIREQWQQWFNKLPPVRQQSDEVKEVRWMI
EELRVSYFAQQLGTPYPISDKRILQTMEQLI
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaccgctcgcggcattatcagcgcagttagacgggctgatgctacgtgaccgg
caacgcctgcaacgtcgtttgcagggtgccagaaagattgataaacccgaagcactcgat
gcgttaggtgctgaaatccagactgccatcaacgagagtctgaagaaagtcagcgcccgt
gaagcctcgcggccaaaaatcagttacccagaaaacctgccggtcagtcagaagaaagac
gacatctataacgccatccgtgaccatcaggtcgtgattgtggcgggggaaaccggctcc
ggtaaaaccacgcagatccctaaaatctgtatggagcttggacgcggtattaaaggcgtg
attggtcatacccagccgcgacgtctggcggcgcgtaccgtggccaaccgtattgccgat
gaactcgataccacgctgggtaacacggtcggttataaagtacgctttaacgatcaggtc
agtgaaaacacgctcgttaagctgatgactgacggtattctgctggccgaaatccagcag
gatcgcatgctgatgcagtacgacacgctgatcatcgatgaagcgcatgagcgtagtctg
aatatcgactttatcctcggttatctgcgtcagttactgccaaagcgcccggatctgaaa
gtcatcattacgtcggcgaccattgatccgcagcggttctcgcgccatttcaataatgcg
ccggtcattgaagtttccggccggacttatccggttgacgtgcgttatcgcccgattgtg
gatgacgcagacgatgtggatcgtgaccagttgcaggcgattttcgacgcggtcgatgaa
ctgggtcgcgaaagcatgggcgacatcctgattttcatgagcggtgagcgtgaaatccgg
gataccgccgacgcgctgaaccgtctggatttgcctcacaccgagattttgccgctgtat
gcacggctgtcgaacagcgagcagaaccgcgtgttccagtcgcattccggccgccgtatc
gtgctggcgaccaacgttgccgaaacctcgctgaccgtgccgggcattaaatatgtcatt
gaccccggcaccgcacgtatcagccgttacagtttccgcaccaaagtgcagcgtttgccg
atcgagccggtttcacaggcttcggctaaccagcgtaaagggcgttgcggacgcgtttcc
gaaggtatctgtatacgcctgtattccgagcaggatttcctgtcgcgcccggagttcacc
gatccggaaatcctgcgcaccaatctggcctccgttattttgcaaatgacctcgctgggt
cttggtgatattgcggcattcccgtttgttgaagccccggataaacgcaacattcaggat
ggcgtccgtctgctggaagagctgaacgccattaataacgccgtcgatggccgttatacg
ctgaccccgctggggcgtcagctggcgcagttgccggtggatccgcgtctggcgcggatg
gtgctggaagcgcagaaaaacggctgtgtgcgtgaggtgatgatcattaccgccgcgttg
tcgattcaggatccgcgtgagcgtccgatggataaacagcaggcgtctgatgaaaaacat
cgccgttttgctgacaaagactctgatttcctggcgttcgtgaatttgtgggaccatctg
aaagtgcagcaaaaagagctgtcttcggcgcagttccgcaagctgtgccgcagcgatttt
cttaactatttgcgtgtgcgtgaatggcaggacatttatacccagttgcgtcaggtcgta
aaagaactggggctgccggttaacagcgaacccgctgaataccgtgaagttcactgcgca
ttgctgaccggtttgctgtcacatatcggtcagaaagatgtcgataagcaggaatatacc
ggcgcgcgcaacgcccgttttgcggtcttccccggctccgggttattcaaaaagccaccg
aagtgggtgatggtcgccgaactggtggaaaccagccgcctgtggggacgtattgccgca
cgtatcgaaccggaatggatcgaaccgctggcgaaacatctggcgaaaagcagttacagc
gagccgcactgggaaaaagcgcagggtgcggtgatggcgacggaaaaagtcacgctctac
ggtctgccgattgtggcggcacgtcgggtgaattacggcacgattgatccggtggtgtcg
cgcgaactgtttatccgtcatgcgctggtggaaggcgactggcagacgcgtcatgcgttc
ttccgcgctaacctgcgcctgcgtacggaagtggaagagctggaacataaatcccgtcgc
cgcgatattctggtcgacgacgaaaccctgttcctgttctatgagcaacgcatcggccag
gaagtggtctcggcgcgccactttgatacctggtggaaaacgcagccgcaggacagcctc
aacttcgaaaaaagcatgctgatcaaagagggcgcaggcaatatcagcgctcacgattac
ccgaacttctggcatcagggcaatctcaaactgcgcgttacgtaccagtttgagccgggc
actgatgctgacggcgtgacggtacatattccgttgccgctgctcaatcaggtcagcgaa
gaaggctttgactggcaaattccggggatccgccgtgacctgatcatggcgctgatcaaa
tccctgccgaaaccggttcgtcgtaacttcgtgcccgcgcccaactatgcggatgccttg
ctcggtcgcataaaaccttttgagataccgttgctggatgcgatggaaaaagaactgcgc
aaaatgagtggcgtgacggtgtcacgtgaagactggcagtgggatcaggtgcctgatcat
ctcaaaatgacgttccgtattgtcgatgataaaaacaaaacacttcgcgaaggtaaagat
ctgactgcgctgaaatccggcctgaaagagcaggttcagcaaacgctttctgcggtcgcg
gatgacggcatcgaacagcgcgacctgcatgtctggagctttggcaccttgccggaacgc
tatgaacaaaagcgcggtggttatgaagtgaaagcttatccggcgattgttgatgaaaag
gacagcgtggcaatccgcctgttcgacagcgaactggaacagcaacaggctatgctcagc
gggatgcggcgcttactgctgctgaatatcccttcgccggtcaaatatttgcacgagaaa
ttgccgaacaaagccaagctgggactgtattttaacccgtacggcaaggtgctggatttg
attgacgactgcatttcctgcggcatcgacaaactgattgcagagtccggcgggctggtg
tggcgcgaagaagatttcgcgaaattacatgagcatgttcgcgcaaatctcaatgatacg
gtggtgcaaatcgccattcaggtggagcagattctgacgaccgttttcagcatcaacaaa
cggctgaaagggcggattgatatcaccatggcgctggcgctttctgatatcaaagcgcag
atgtccgggctgatttaccggggcttcgtgacacaaaacggctggaaacgtttaccggat
acgctgcgttatttgcaggggattgaacgcaggatggacaaactggccatggacccacac
cgcgaccgcgcccagatgatgaaagtggaaaacatccgggagcaatggcagcagtggttc
aacaaactgccaccggtgcgtcagcaaagtgacgaggtgaaagaagtccgctggatgatt
gaagaactgcgcgtcagctatttcgctcagcaactgggcacgccgtacccgatttcagat
aaacggattttgcagacgatggagcaactgatttaa
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