Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_2350
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Entry
Rahaq2_2350 CDS
T01770
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
raq03016
]
Rahaq2_2350
Enzymes [BR:
raq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rahaq2_2350
Transfer RNA biogenesis [BR:
raq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Rahaq2_2350
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEX52204
UniProt:
H2J022
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Position
2499624..2501567
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AA seq
647 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGIVKGTEKGFGFLEVDGQKSYFIPPPYMKKVMHGDRV
IASLQTEKEREVVQPETLVEPFLSRFVGRVTKKDDRLSIIPDHPLLRDAIQCRVARNINH
EVSDGDWCVAEMRRHPLKEGDHSFQAEITEWITTGADDLAPWWVTLARHNLEREAPKSDI
AELRDEGLTREDLTALPFVTIDSGSTQDMDDALYVKDNGDGTLQMTVAIADPTAYVSEGS
ELDNIAKKRAFTNYLPGFNIPMLPRELSDDICSLWPDVSRPVLACSVTVGTDGALGNDIR
FFAATIESKAKLAYDDVSDWLEADEQSEWQPASEVIASQIRLLKRVCDLRSAWRTEHALV
FKDRPDYRFVLGEKGNVLEIVAEHRRIANRIVEESMIAANVCAAIALRDSLGFGVYNVHT
GFDPLLVENAVTVLQANDVEANAEELLTLPGFCALRRKLDALPTQFLDSRIRRFQTFAEI
STTPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAMILQQSAGKPQDDMTLQLAERRRA
NRMAERDVGDWLYARYLEDKVGTDVKFSAEIIDVTRGGLRVRLQDIGAVAFIPASFLHSV
RDELVCSAETGTVLIKGEVAYRQSDMIEVNIAEVRMENRNVIAKPAV
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctgctcgcgcagctaaaacagcaacttcactctcagactcca
cgtgtcgaaggcatcgtgaaaggcactgagaaaggctttggctttcttgaagtagatggt
caaaaaagctatttcattccccctccgtacatgaaaaaagtcatgcacggcgatcgtgtt
atcgcttccctgcaaaccgaaaaagagcgtgaagtcgtccagccggaaaccttggttgaa
ccttttctcagccgttttgttggccgcgtaacgaagaaagacgatcgtctttctatcatt
cctgatcaccctttattacgtgatgctattcagtgccgcgttgcccgaaacatcaatcat
gaagtgagcgacggcgactggtgtgtggccgaaatgcgccgccacccgctgaaagaaggc
gatcacagcttccaggctgaaatcaccgaatggatcaccaccggcgccgacgatcttgcg
ccgtggtgggtcacgctggcacgtcataatcttgaacgtgaagcgccgaaatcggatatt
gccgaactgcgtgatgaaggcctgacccgcgaagatctgactgccctgccatttgtcact
atcgacagtggcagtacccaggacatggatgacgcgctgtatgtgaaagacaacggcgac
ggcaccctgcaaatgacggtcgcaattgcggacccgacggcttacgtcagcgaaggcagc
gaactcgacaacattgcgaaaaaacgcgcattcaccaactatctgccgggcttcaatatc
ccgatgctgccgcgtgaattgtccgatgatatctgttccctgtggccggacgtcagccgt
ccggttctggcgtgttctgtcacagtgggcactgatggcgcactgggcaacgatattcgt
ttcttcgccgcaaccattgaatcgaaagccaaactggcttacgacgatgtgtctgactgg
ctggaagcggatgagcaaagcgaatggcaaccggccagcgaggtgatcgcctcccagatc
cgtctgctcaaacgcgtttgcgacctgcgcagcgcatggcgtaccgaacatgcgctggtg
tttaaagaccgtcctgattaccgcttcgtgctgggtgagaaaggcaacgtgctggaaatc
gtcgcggaacaccgccgcattgccaaccgcatcgttgaagaatcgatgattgccgccaac
gtctgtgccgctatcgccctgcgcgacagcctcggtttcggcgtttacaacgtacatacc
ggttttgatccgttactggttgaaaacgcggtcaccgtgctgcaggccaatgatgttgaa
gccaacgctgaagaactgctgaccctgccaggtttctgcgcactgcgccgtaagcttgat
gcattgccaacacagttcctcgacagccgcatccgtcgtttccagacctttgcagaaatc
agcaccacaccgggcccgcacttcggtctgggtctggaagcttacgcgacctggacatcg
cctatccgtaaatacggtgacatggtgaaccaccgtctgctgaaagcgatgatcctgcaa
cagtctgctggaaaacctcaggacgatatgacccttcagctggcagaacgccgtcgtgcc
aaccgcatggccgagcgcgatgttggtgactggttatatgcccgttatctggaagataaa
gtcggtactgacgttaaattcagcgctgaaatcatcgatgtcacccgcggcggtcttcgt
gtacgtctgcaagatatcggcgccgtagcattcatcccggcttcgttcctgcacagcgtg
cgtgatgaactggtctgcagcgccgagacgggcactgtgctgatcaaaggcgaagtggct
tatcgtcagagcgacatgattgaggtgaacattgcggaagttcgcatggaaaaccggaat
gtgatcgccaaaccggcggtgtaa
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