Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_3106
Help
Entry
Rahaq2_3106 CDS
T01770
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rahaq2_3106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raq03019
]
Rahaq2_3106
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rahaq2_3106
Messenger RNA biogenesis [BR:
raq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rahaq2_3106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
Shikimate_DH
DUF6256
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AEX52926
UniProt:
H2IVS8
LinkDB
All DBs
Position
complement(3326439..3327848)
Genome browser
AA seq
469 aa
AA seq
DB search
MSFDSLGLSAEILRAVEEQGYREPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
NMLSHTNAQFKGRRPVRALILTPTRELAAQIGENVQAYSKYLTLRSLVVFGGVSINPQMM
KLRGGVDVLIATPGRLLDLEHQRAVDLSQVEILVLDEADRMLDMGFIHDIRRLLAKLPAK
RQNLLFSATFSDEIKGLASKLLTNPASVEVARRNTASAQIEQSVHFVDKKRKRELLSQMI
GEGDWKQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSVRVLV
ATDIAARGLDIDMLPHVVNYELPNVPEDYVHRIGRTGRAEATGEAISLVCVDEHKLLRDI
ERLLKREIPRIALEGYEPDPSIKAEPIINGRQGSGGGGRGAPRQGQRPGAPRTGAPRSGA
PRPGGNGQRSGTSENRGSENRGSAENRPARSRPAHAGQRRTGNAGSGNK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattccctcggcttaagtgccgaaattttgcgtgctgttgaagaacagggc
tatcgcgaacctacgcctatccaacgtcaggctattcctgtcgtgctggaaggtcgtgac
ctgatggcgagtgcgcagaccggtaccggtaaaaccgctggttttactttgccgctgctc
aatatgctcagccataccaacgcgcaattcaaaggacgtcgcccggttcgtgcgctgatc
ctgacgccaacccgtgagctcgcggcgcagattggtgaaaacgtacaggcttacagcaaa
tacctgaccctgcgttcgctggtggtatttggcggtgtgagcatcaacccgcagatgatg
aaactgcgcggtggtgtggatgtgctgatcgcaacgccgggtcgtttgcttgatctggaa
catcagcgtgctgttgatttatctcaggttgaaattctggtgctggacgaagccgaccgc
atgctggacatgggcttcattcatgacatccgccgcctgctggcaaaactgcctgccaag
cgtcagaacctgctgttctccgcgacgttctctgatgagattaaaggtctggcgagcaag
ctgctgaccaacccggcttctgtagaagtcgcgcgtcgcaataccgcttctgcgcaaatt
gaacaaagcgttcattttgttgataagaaacgtaaaagagaattgctgtctcagatgatc
ggtgaaggcgactggaaacaggtgctggtgttcaaccggaccaaacatggtgcaaaccat
ctggctgaacagttgaataaagacggcatcacggctgcggctattcacggcaacaaaagt
cagggcgcacgtacccgtgcactggctgattttaaagccggttctgtccgtgttctggtg
gcaacagacatcgctgcgcgtggcctggatatcgatatgttgccgcacgtggtgaactat
gaactgccaaacgtaccggaagattatgttcaccgtatcggccgtaccggtcgtgcggaa
gccaccggtgaagcgatttctctggtgtgtgtcgatgaacacaaactgctgcgtgatatc
gaacgtctgctgaaacgtgaaattccgcgcatcgcgctggaaggctacgagccagacccg
agtatcaaagctgagccgatcattaatggtcgtcagggcagcggcggcggcggtcgtggc
gcgccacgtcagggccagcgtccgggtgcaccgcgtaccggcgctccacgttcaggcgct
ccgcgcccgggcggcaacggtcagcgcagcggcacctctgaaaaccggggttcagaaaac
cgcggttcagctgagaaccgtccggcacgttcgcgtcctgcacacgcaggccagcgtcgt
accggcaatgcgggcagcggcaacaaataa
DBGET
integrated database retrieval system
