Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_3186
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Entry
Rahaq2_3186 CDS
T01770
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K05522
endonuclease VIII [EC:3.2.2.-
4.2.99.18
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rahaq2_3186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_3186
Enzymes [BR:
raq01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rahaq2_3186
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rahaq2_3186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-dskA_traR
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AEX53001
UniProt:
H2IWK6
LinkDB
All DBs
Position
complement(3400672..3401466)
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AA seq
264 aa
AA seq
DB search
MPEGPEIRRAADLLAAAVVNKPLTDVWFAFPALKPYQSALRGTKITSIETRGKALLTHFS
NGLTLYSHNQLYGVWRVVNAGDVAQETQRSLRVKLETTDAAILLYSASEISIYDTADIEN
HPFLQRIGPDVLDEWLTVAQVRERLLSPKFCNRQLGGMLLDQAFLAGLGNYLRSEILWLA
KLLPDHKPKELNETERDALADACLSVARLSYATRGTMDENVHHGALFRFKVFGRTGLPCE
RCGDPIMKTSVSSRPFFWCPVCQV
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaggtcctgaaattcgccgtgctgctgatctgctggctgctgcggtagtgaat
aagcccctgacggatgtctggtttgcgtttccggcgctgaaaccttatcagtcagcgctc
aggggcacgaaaatcacgtcaattgaaacacgcggaaaagcgctgctgacgcacttttcc
aacggtctgacgctctacagccacaatcagctttacggtgtctggcgggtggtgaatgcc
ggtgacgtggcgcaagaaacccaacgctcgttgcgggtaaagctggaaaccacagacgcg
gcgatcctgctgtacagcgcgtccgagatcagtatttacgatacggcggacattgaaaat
catccgttcctgcaacgtatcggcccggatgtgctggatgagtggctgaccgtcgcgcag
gtccgtgagcggttactttcgcctaaattttgcaatcgccagttaggcggaatgttgctg
gatcaggcatttctggcggggctgggtaattatctgcggtcggaaattctctggctggcg
aaactgctgccggatcataaacccaaagagctgaacgaaacggaacgggatgcgctggcc
gatgcctgtttgtcggttgcgcgcttgtcatatgccacacgcggcacgatggatgaaaat
gtgcatcacggtgcgctgtttcgcttcaaagtgtttggccgcacagggctgccgtgcgag
cgttgcggcgatccgatcatgaaaaccagcgtgtcatcgcgaccgttcttctggtgtccg
gtgtgtcaggtatag
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