Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_4241
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Entry
Rahaq2_4241 CDS
T01770
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rahaq2_4241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
raq03021
]
Rahaq2_4241
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_4241
Enzymes [BR:
raq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rahaq2_4241
Transcription machinery [BR:
raq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rahaq2_4241
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rahaq2_4241
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEX54003
UniProt:
H2IVU8
LinkDB
All DBs
Position
complement(4512294..4516514)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRGG
LASLHARVKVRITEEIKNTEGEVTHKTSIIDTTVGRAILWMIVPKGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPAKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGVVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDILKPGTADILVPRNTLLHEKTCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNTGTIKL
SNHKHVSNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMGKGDGASVNGGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSLVVLDSAERTGSGKDLRPALKI
VDAKGDDVLIPGTDMPAQYFLPGKAIVQLEDGTQIHSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKGTIVSAGGTDFLEGEQAEMSRVKIANRQLEAEGKITATFTRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRARRKAQGEVPV
VPQVSADEATANLAELLNAGFGNSDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttactaaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgctctggcatcgccagacatgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtacgttcaaaccagaacgtgacggccttttctgtgcccgt
attttcggaccagtaaaagactacgaatgcctgtgcggtaagtacaagcgtttaaaacat
cgcggcgtgatctgcgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcacacatctggttcctgaaatcgctg
ccatcgcgcatcggtttgctgctggatatgccactgcgtgacatcgaacgtgttctgtac
ttcgaatcctatgtggttatcgaaggcggcatgactaacctcgaaaaacgccagatcctg
actgaagagcagtatctggatgcgttggaagagtttggtgatgagttcgacgcgaagatg
ggtgcggaagctattcaggccctgttgaaaaacatggatctggaagcagagtgcgagcaa
ctgcgtgaagagttgaatgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgact
gtgctgccggtactgccaccagacttgcgtccattggttccgttggacggcggccgtttc
gcaacgtcggatctgaacgatctgtatcgtcgcgttattaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgccagacatcatcgtacgtaacgaaaaacgtatgctgcaa
gaagcggtagatgctttgctggataacggccgtcgcggtcgtgcaatcaccggctctaac
aagcgtccgctgaaatctctggcagacatgattaaaggtaaacaaggtcgtttccgtcag
aacttgctgggtaaacgtgtcgactactcgggtcgttccgttatcaccgtaggtccatac
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactggaactgttcaaaccgttc
atttacggcaagctggaactgcgtggcctggccaccaccatcaaagccgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaaccctgcaccgtttgggtatccaggcatttgaaccggtt
ctgatcgaaggtaaagcaattcagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgttgacgctggaagctcagctggaagcg
cgtgcgttgatgatgtctaccaacaacatcctgtcacctgcgaacggcgagccaatcatc
gttccttctcaggacgttgtattgggtctgtactatatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggttctgaccggtcctaaagaagctgagcgtatttatcgcggcggt
ctggcctctctgcatgcgcgtgtcaaagtgcgtatcaccgaagagatcaaaaataccgaa
ggcgaagttacgcacaagacgtcgattatcgacacgactgtcggtcgcgccatcctgtgg
atgatcgtgccaaaaggtctgccgttctctatcgtcaaccagcctctgggcaaaaaagct
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgaccgttattttt
gctgaccagatcatgtacaccggttttgcttacgctgcccgttcaggcgcgtctgtaggt
atcgatgacatggtaatccctgcgaagaaagcagagatcatcgaagaagcagaaaccgaa
gttgctgaaatccaggaacagttccagtctggtctggtcactgctggcgaacgctataac
aaagtgatcgacatctgggctgcggccaacgaacgtgttgctaaggcaatgatggaaaac
ttgtctgttgaagacgtcgtcaaccgtgacggtgttgttgaacagcaggtttccttcaac
agtatctttatgatggctgactctggtgcgcgtggttctgctgcacagattcgtcagctg
gccggtatgcgtggcctgatggctaagccggatggttccatcattgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctctactcacggtgctcgt
aaaggtttggcggataccgcacttaaaacggctaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgtgaccgaagacgactgtggtactcacgaaggcatc
atgatgactccggttatcgaaggtggcgacgttaaagaacccctgcgcgaacgtgtattg
ggtcgtgtaactgcagaagatatcctcaagccggggacggcggatattctggttccacgt
aacaccctgcttcacgaaaagacgtgtgatctgttagaagagaactcagtcgacagcgtg
aaagtacgttcagtcgtaagttgcgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggtcacatcatcaacaaaggtgaagcgatcggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggcagcagaatcgagcattcaggttaagaacaccggtaccattaaactg
agcaaccacaagcacgttagcaactctaacggcaaactggttatcacttcccgtaacact
gagctgaaattgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggt
tccgtgatgggcaaaggtgatggtgcatctgttaacggcggcgaaaccgtagctaactgg
gatccgcacacaatgccagttatcagtgaagtgagtggtttcattcgctttgccgatatg
gtggatactcagaccattacccgccagaccgacgacctgaccggtttgtcttctctggtt
gttctggactctgcagagcgtaccggtagcggtaaagatctgcgtccggcactgaaaatc
gttgacgctaaaggcgacgacgtattgatcccaggtactgatatgcctgctcaatacttc
ctgccaggtaaagcgattgttcagctggaagatggtactcagatccactctggtgacacc
ctggcgcgtattcctcaggaatccggcggtaccaaggacatcaccggtggtctgccacgc
gttgctgacctgttcgaagcacgtcgtccgaaagagcctgcaatccttgctgaaatcagc
gggatcatctccttcggtaaagaaaccaaaggcaaacgtcgtctggtaatttctccgttg
gatggcagcgatgcttacgaagaaatgatccctaaatggcgtcagctgaacgtgttcgaa
ggcgaagttgtggaacgtggtgacgtcgtatccgacggtcctgagtctccgcacgacatc
ttgcgcttacgtggtgttcacgcggttacccgctacatcaccaacgaagtgcaggaagtt
taccgtctgcaaggcgttaagattaacgataaacacattgaagttatcgttcgtcagatg
ttgcgtaaaggcaccatcgttagcgcgggtggcactgacttcctggaaggcgagcaggca
gaaatgtctcgcgttaaaatcgctaaccgtcagctggaagctgaaggcaaaatcacggca
acctttacccgtgacctgctcggtatcaccaaagcctctttggcaaccgaatccttcatc
tctgcagcgtcgttccaggaaactacgcgcgttcttactgaagccgctgttgcgggtaaa
cgtgatgaactgcgtggcctgaaagagaacgttatcgttggccgtctgatcccagccggt
accggttacgcttatcatcaggatcgtgcacgccgtaaagcacaaggcgaagtgccagtt
gtaccgcaagtcagcgcggatgaagcaacggctaacctggctgaactgctgaacgcaggt
ttcggtaacagcgacgattaa
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