Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_4348
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Entry
Rahaq2_4348 CDS
T01770
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03420
Nucleotide excision repair
raq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rahaq2_4348
03430 Mismatch repair
Rahaq2_4348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
raq03400
]
Rahaq2_4348
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rahaq2_4348
DNA repair and recombination proteins [BR:
raq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rahaq2_4348
MMR (mismatch excision repair)
Other MMR factors
Rahaq2_4348
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AEX54100
UniProt:
H2IWQ1
LinkDB
All DBs
Position
complement(4629688..4631850)
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AA seq
720 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAV
TFTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQI
RLIKRLIKALNIDDKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDN
NNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAQTIRLEQNYRSSSTILKAANSLIENN
NGRMGKNLWTEDGEGEPISLYCAFNELDEARFVVNRIKTWQDNGGALKDCAILYRSNAQS
RVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQMTMWQATRALLQEKVLAGRAASSLQRFTELVDALAHETSDMPLHVQ
TDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRANVSRPMSNRSVG
TPTSVSDTGFKLGQRVMHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAYARLEAV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgacctgctcgacagcctgaatgaaaaacaacgtgaagccgtggccgcg
ccgcgcagcaatctgttggtactggccggggcaggcagtggcaaaacccgcgtactggtt
caccgcatcgcgtggctgctggcggtcgaaaagtgctcaccgtattccattatggcggtc
acctttactaacaaagcggcggcagaaatgcgccaccgtatcgaccagctgattggcacc
agtcagggcggcatgtggattggcaccttccacggtctcgcgcaccgtttgctgcgtgcg
caccatttagatgccaacctgccgcaggatttccagatcctagacagcgacgaccagata
cgtctgatcaagcgcctgatcaaagcgctgaacatcgacgataaacaatggccgccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaaggtctgcgcccgcagcatgtcgaa
acctacaacaacccggttgaagcgacctggctgcgcatttatcaggcctatcaggaagcc
tgtgaccgcgccgggctggtggactttgccgagctattactgcgcgctcacgaactctgg
ctgaacaagccgcatatcctgcaacattaccgcgaacgttttaccaacctgatggtggac
gaattccaggacaccaacagcattcagtacgcgtggatccgtctgctggcgggtgacaac
aataacgtgatgatcgtcggcgacgatgaccagtcgatctacggctggcgcggtgcgcag
gtcgaaaacatccagcgttttctgaaagatttcccgaatgcgcaaaccattcgtctggaa
cagaactaccgttcgagcagcaccattcttaaagccgccaactcgctgattgaaaacaac
aatggtcgtatggggaaaaacctgtggaccgaggacggcgaaggcgaaccgatttcgctg
tattgcgcatttaacgagctggatgaagcgcgctttgtggttaaccgcatcaaaacctgg
caggacaacggcggtgcgctgaaagactgcgccattctttaccgcagcaacgcccagtcg
cgtgtgctggaagaagcgttattgcagatggcgatgccttaccgcatttacggcgggcag
cggttcttcgaccgtcaggaaatcaaagatgcgctggcgtatctgcgcctgatgtctaac
cgtaatgatgatgctgcatttgaacgcgtagtgaacacaccgacacgcggcattggcgac
cgcacgctggatgtggtgcgccagacggcgcgtgaccgccagatgaccatgtggcaggcc
acgcgcgcgctgttgcaggaaaaagtgctggcaggccgtgcggcgtcttcactgcaacgc
ttcaccgagctggttgacgcactggcgcatgaaacgtcagatatgccgctgcatgtgcag
actgaccgggtgatcaaagattccggcctgttcatcatgtatgagcaggagaaaggcgaa
aaaggtcaggctcgtattgaaaacttagaggaactggtgacggcgacgcgtcagttcagc
tatcaggatgaagacgaagatttgatgccgttgcaggcgtttttgtcccatgccgcgctc
gaagcgggcgaagggcaggcggacgccaatcaggatgccacgcagctgatgacgctgcac
tcggcgaaaggactggagttcccgcaggtgtttatcgttggcatggaagaaggcatgttc
ccgagccagatgtcgctggaagaaggcgggcgtctggaagaggaacgccgtctggcctat
gtcggcgtcacccgcgccatgcaaaaactgaccctgacctacgcggaaacccgtcgttta
tacggcaaagaagtgtctcaccgtccgtcacgttttgtcggcgaattgccggaagactgt
gtcgaagaagtcaggatgcgcgccaacgtatcacgcccgatgagcaaccgcagcgtcggc
acgcccaccagcgtcagcgacaccggcttcaaactcggccagcgcgttatgcaccctaaa
ttcggcgaaggcaccatcgtcaacatggaaggcagcggcgaacacagccgtctgcaggtg
gcgtttccgggggaagggattaagtggctggtcgccgcctacgcccgtctcgaagccgtc
tga
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