Rahnella aquatilis CIP 78.65 = ATCC 33071: Rahaq2_4378
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Entry
Rahaq2_4378 CDS
T01770
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
raq
Rahnella aquatilis CIP 78.65 = ATCC 33071
Pathway
raq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
raq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rahaq2_4378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
raq03019
]
Rahaq2_4378
Enzymes [BR:
raq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rahaq2_4378
Messenger RNA biogenesis [BR:
raq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rahaq2_4378
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEX54124
UniProt:
H2IWS5
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All DBs
Position
4658760..4660052
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AA seq
430 aa
AA seq
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MSKTHLTEQKFSDFALHPLAVEALEKKGFHYCTPIQALALPITLAGRDVAGQAQTGTGKT
LAFLASTFHYLLSHPAAEGRQTNQPRALIMAPTRELAVQIHSDAEALSESTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYTKQNYIDLGAIQVVVLDEADRMFDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVKELAFENMNNAESIEIEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVPQKKRLRVLE
DFTKGTLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGLSGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPPAKRLARTRTGNGPRRNSNSSSRRSS
APRSNRKRPG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgctggca
gtagaagcccttgaaaagaaaggcttccattactgtactcctattcaggcattggcactg
ccaatcacgctcgctgggcgtgatgttgcaggtcaggcgcaaaccggtaccggcaagacg
ctggcttttttagcgtctactttccattatctgctttctcaccccgctgcggaaggtcgt
cagactaaccagccgcgtgccttgatcatggcacctacgcgtgaactcgcggtgcagatc
cactccgacgccgaagcattatctgaatctaccgggctgaaattaggtctggcgtatggc
ggcgacggttacgacaaacagttaaaagtactggaaagcggcgtggatatcctgatcgga
accactggccgtttaatcgattacactaaacagaactacatcgacctgggcgcgatccag
gtggtggtactggatgaagcagaccgtatgttcgatctgggcttcatcaaagatatccgc
tggttgttccgccggatgcctcctgcgaatcaacgcctgaacatgctgttctcagcaacg
ctttcctatcgtgtgaaagaactggcgttcgaaaacatgaataatgccgagtcgattgaa
atcgaaccggaacaaaaaaccggccaccgcattaaagaagagctgttctatccttcaaat
gaagaaaaaatgcgcctgttacagacgctgattgaagaagaatggccggatcgctgcatt
atttttgcaaacaccaaacaccgttgtgaagatgtctggggccatctggctgccgacgga
caccgtgtcggtttgctgaccggtgacgttccgcagaaaaaacgccttcgcgttctggaa
gacttcacgaaaggcacgctggatattctggttgcgaccgacgttgctgcccgtggtttg
cacattcctgccgtgacgcacgtcttcaactatgacctgcctgacgactgtgaagactac
gtacaccgtattggccgtaccggccgcgcgggtctgagtggtcattccatcagcctggcg
tgtgaagaatatgccctgaatctgccggcaattgaaacctataccggccacagcattccg
gtcagtaaatacaacagcgatgcgctgttaactgatttgcctcctgcaaaacgtcttgcc
cgcacgcgcaccggtaacggcccgcgtcgcaacagcaattcgtcttcacgtcgcagcagt
gcaccacgtagcaaccgtaaacgtccgggctga
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