Riemerella anatipestifer RA-GD: RIA_0224
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Entry
RIA_0224 CDS
T02007
Name
(GenBank) putative viral A-type inclusion protein
Organism
rar
Riemerella anatipestifer RA-GD
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMP_3
Dermcidin
Y_Y_Y
Motif
Other DBs
NCBI-ProteinID:
ADZ11411
LinkDB
All DBs
Position
189339..193520
Genome browser
AA seq
1393 aa
AA seq
DB search
MNTNNGGLFFGAAIDMTQWRKDLREIQADILGLNQKTQEQTRQMDTSFKNLSIGIAGYFS
GQALMGFTRQLINVRGEFQKAEIAFSTMLKSKEKANELMGQMVDLAAKTPFGLNDVTEGA
KRLLAFQVPAEQVTETLTRMGNIAAGLGVPMGQLIHVYGQVKAQGKIMTNDLYQFMNAGI
PILSELGKVLGKSEAEIKDMVSAGKIGFPEVQAVIKNMTDEGGLFFNIMEEQSKVLSGQV
SNLEDAFERMLNKIGEGNEGILYSGIEGATYLVEHYEDVIDVLTILVATYGSYRAALIVT
SVLQKAQIAQQAISNWLSLAKSIRTAKDAQALFNLTTSANPIGAIIALIGLLATTYVTYG
DEIKKLIGITNEYDEINKELSETLSEIDQKGTEEISTLGKLYKVATDDKKSREERLAATK
RLQNEYPSYFGNLSAEIIMAGKAANAYNSLREAIIASAKARAIRSKIEEIEKERLEGEAE
LINKKEEILKKYRKGKKEGWKDETVNYGRDEFGKSNIVTFRGEDNKKALASQFVDVNKRL
KEYQKETEKQTQVFADMAEEQERISAKYNADRQKREEEEAKKQQTSLSNTANETKKKAKA
HQKALAEVYSKNSIKDLEERISLWNNALERATKDKDGNYQVKVRGKDKYGKEYETGQVVS
KDKALEELKVLNEAKAKIEEEFRIKSTEEELAELKRRINLRDKYLQIGMNRPELINEDTV
NNLFPDLKDKSYVQVLEEKRKAYLGLIEAQKATEQTTIDLIFIENELKNANGTETFMQGV
NDRISELKEKYKGAELIDKLKKAKSLQLGGTEEDNLERNKAYASALKEAQKDYDKFYRDL
LEQQKTYEEKSLELQKEYTALKATERYKNATPEEQKKIDKHYKKEQSKLDMDAFKESGDW
ALAFSDLEYMSQSTIERVIKNFEDFKRAKEQNLEPTELRELNDTLNKLRAKAGNNPFTGI
ISGVKGYVQANKDAKTAQDEYNATVDKFGKNSPQAQEAYRKMTDAEQEAIKAKQLLNAQL
QKGQDIFNATIQGVTELADAFGGMDDATKDAIEDITAVGNAAFDLAKSISSGNIAGMISA
GLKLIGSIFKALNGDKRREREVRRQEQAIRKLKDAYDELSHALDKAFGSQKQKGQRELIQ
NLRQQQQAIQNAKNAESQKKKKDQGKIDEYNAQYKATERAIKDLEESIIKDVLQTDIPEM
AAKIGDVLEDSFLRGKDGLKDLDKAFNNMLRGIARHQLDLFLQDEMKGFYEKARSYAGFD
EKGNGSFDGFQDWEIESLKSMWQSISENGRKFLEGMSNVYEGFQELEDPDSLAGAMRGMS
EETAGILAGQFNAIRIHVAEIQKNQGFGLDIAKSSLLNLMKIEENTRNLYQMRKDLAEMN
AKIKSNDTRGLGL
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgaataccaataacggaggattattttttggagcagcaatagatatgacccaatggcgt
aaagacctaagggagatacaagcagatattttaggtcttaatcaaaaaacgcaggaacaa
actcgccaaatggatacttcgtttaaaaatttatctattggtattgcgggttatttttct
ggacaagcgttaatgggctttactcgccaactaataaatgttagaggcgagttccaaaag
gcagaaattgccttttccacaatgctcaaaagcaaggaaaaggctaatgagttaatgggg
caaatggtggatttagccgccaaaacgcctttcggtcttaacgatgttacagagggggca
aaaaggttattagcatttcaagttcctgccgaacaggtaacagaaacccttacaagaatg
gggaatattgctgcgggtcttggtgtccctatggggcaacttattcatgtgtatgggcaa
gtaaaggcacaaggcaaaatcatgactaatgacctgtatcagtttatgaatgcaggtatc
cctattctttccgaattaggtaaagtgttaggtaaaagcgaagcagagattaaagatatg
gtttctgcaggaaaaataggttttccagaagtacaagccgttatcaaaaatatgaccgat
gaaggagggttattctttaatataatggaggagcaatctaaggttttatctgggcaggta
tcaaatttagaagatgcttttgaacgaatgctcaataagattggcgaaggtaatgagggc
attctgtatagcggtattgaaggagcaacctatttggtggagcattacgaagatgttata
gatgttttaaccattttagtggcgacttatggctcgtatcgtgcggcgttaattgtaacc
tctgtattacaaaaagcacaaattgcccaacaggctatatcaaattggctatcgttagcc
aaatcaatcagaacggcaaaagatgcacaagccttgtttaatcttactacatcagctaac
ccaataggtgctattatagctctaataggtcttttagctactacttatgtaacctatgga
gatgaaataaaaaaactaatcggcataactaatgaatacgatgagataaataaagagtta
agcgagactttatccgagatagaccaaaagggtactgaagaaatttctacacttgggaaa
ttatataaagttgcaacagatgataaaaaatcaagggaggaaagattagctgctacaaaa
agacttcaaaatgaatatccttcttattttggaaacttatctgctgaaatcattatggca
ggtaaagctgctaatgcatacaattctcttcgtgaggctatcatagcatctgctaaagca
agggctattcgttccaaaatagaagaaatagaaaaagagagattagaaggggaagcagaa
ctcatcaacaagaaagaagaaattctaaaaaaatacagaaagggtaaaaaagaaggttgg
aaagatgaaactgtaaactatggcagagatgagtttggaaaaagtaacattgtaacattc
agaggagaggataataaaaaggctttggctagtcaattcgttgatgtaaataaacgccta
aaggagtatcaaaaagaaacagaaaaacaaactcaagtatttgcagatatggcggaagaa
caagaaagaatttctgccaaatacaatgctgataggcaaaaaagagaggaagaagaagct
aaaaaacaacaaacgagtttatccaatacggcaaacgaaaccaagaaaaaagccaaagca
caccaaaaagccttagcagaggtttattctaagaactcaataaaggatttagaagagcgt
atttccctttggaataatgctttagaaagagccactaaagacaaagacggaaattatcaa
gttaaggtaagagggaaagacaagtatggaaaagagtatgaaacagggcaggtggtttct
aaggataaagcactagaggaactcaaagtccttaatgaagctaaagctaaaattgaggaa
gagtttaggataaaatccacagaagaagaactagcagaactcaaaagaagaatcaatctt
agggataagtatttacaaataggaatgaatagacccgaactcatcaatgaggatacggta
aataatctatttcctgacctaaaggacaaatcttatgtccaagtcttagaagaaaaaaga
aaggcttatctagggctaatagaagctcaaaaagcgacagaacaaactactatagattta
atcttcattgaaaatgaattgaaaaacgctaatggtacagaaacctttatgcaaggcgtt
aatgatagaatttcagaacttaaagaaaaatataaaggggctgagcttatagataaactt
aaaaaagccaaaagtttacaactaggcggaacagaagaagataatttagagagaaacaaa
gcctatgcttcggctttaaaggaagcccaaaaggactacgataagttttacagagacctt
ttggagcaacaaaaaacatacgaagaaaaaagccttgagttacaaaaagaatacacagcc
ctcaaagccacagaaagatacaaaaatgccactccagaagagcagaaaaagatagacaag
cattataagaaagagcagtccaaattagatatggacgcttttaaagaatctggcgattgg
gcgttggctttctctgatttggagtatatgagtcaaagtaccattgaaagggttatcaag
aactttgaagactttaaaagagccaaagagcagaacctagagcctacggagttaagggag
cttaacgacaccttgaataagctaagagcaaaggcaggaaataatccgtttacaggcatt
atatctggagttaaaggctatgtacaagccaataaagatgcaaaaaccgcccaagacgaa
tataatgctactgttgataagttcggtaaaaatagccctcaagcccaagaggcttacagg
aagatgaccgatgccgaacaagaagccataaaagctaagcagttgcttaatgcacagttg
caaaaaggacaggatatattcaacgctaccatacaaggagtaacagaattagcagatgct
tttggcggaatggacgatgctacaaaagatgctatcgaggatattacagcggtcggtaat
gcggcttttgatttagcaaaaagtatttcgtctggaaatatcgctggaatgataagtgcg
ggattgaagttgataggttccatttttaaagctctaaacggcgataagagaagagaaagg
gaggtaaggcgccaagaacaagccataagaaagctaaaagacgcgtatgatgagttatca
cacgctcttgataaggctttcggatctcaaaagcaaaaggggcagcgggagctaatccaa
aacttgaggcaacagcagcaggcgatacaaaacgctaagaatgcggaaagtcagaaaaag
aaaaaagaccagggaaagattgacgagtacaacgcccagtataaggcgacagaacgagcg
attaaagaccttgaagaaagcattataaaggatgttcttcaaaccgatattcccgaaatg
gctgccaaaattggagatgtgttggaggattcttttttgcgggggaaggatggtttgaaa
gatttggataaggcgttcaacaatatgttgagggggatagcgaggcatcagttggatttg
tttcttcaagatgagatgaagggattttatgaaaaggcaaggagttacgccgggtttgat
gaaaaaggcaatggaagttttgatgggtttcaggattgggagatagaaagccttaaaagt
atgtggcaatccatatctgagaatgggcggaaatttttggaagggatgtcgaatgtttat
gagggattccaagaacttgaagacccggactccttggcgggagcaatgaggggaatgagt
gaggaaaccgcagggatactcgcagggcaatttaatgcaatccgtattcacgttgcagaa
atacagaaaaatcaaggctttgggttagacattgcgaaatcttcgctacttaacctaatg
aaaatagaggaaaacacccgaaacctttatcaaatgagaaaagacctcgcagaaatgaac
gcaaaaataaaatctaacgacactagaggactaggattatga
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