KEGG   Riemerella anatipestifer RA-GD: RIA_0444
Entry
RIA_0444          CDS       T02007                                 
Name
(GenBank) Type I site-specific restriction-modification system, R (restriction) subunit related helicase
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rar  Riemerella anatipestifer RA-GD
Brite
KEGG Orthology (KO) [BR:rar00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rar02048]
    RIA_0444
Enzymes [BR:rar01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     RIA_0444
Prokaryotic defense system [BR:rar02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   RIA_0444
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD DUF4145 HSDR_N HSDR_N_2 Helicase_C Terminase_3C COG4_N AAA_19
Other DBs
NCBI-ProteinID: ADZ11613
LinkDB
Position
complement(400565..404008)
AA seq 1147 aa
MNTNFAFLKNEFKDLYEHSKSAEQNTFTQPRFCLISCRITLEKAMHWLYDNDEDLHLPYQ
KNLAALMYADDFKNIVKPSMFRELVYIQKIGNRAAHGEKVTAMEALQGLKNLFRFLSWVS
KYYSQEDPEIPPFEERYIPYDTPRETEAQVIQDLENKSRAVLEKEEALIRERQLLEQERK
DLRKEREAYLKLMTERKQERTETYQNVEAVPELTSEKETRRLLIDLMLKEAGWGNLQKGI
NTEYPVEGMPASTNPSGKGFVDYVLWDDNGKPLAVIEAKKASYDAANGKHQASLYADALE
RKFGQRPLIFYTNGYEVYFWDDTFYTPRRVYGFFNKKELQTLIKRRKERSDIRQFQINQN
IAGRPYQLQAIQRVAETLVGEHRGNLRGKSRKALLVMATGSGKTRTSAAMVDMFTKCNWA
KRILFLADRNALVTQAKNAFKEHLPHLSAIDLTQDKDDGTARVVFSTYPTMMNRIDQITS
NGERQFSIGHFDVIIIDEAHRSVYQKYQAIFDYFDAILIGLTATPKKDIDRNTYQLFEIE
DDNPTFAYELDTAVKEGFLVPPKALSVPVKYVREGIKYKELNEKDKAEIETLFGLDSEEN
EDFEISKNKINSSLFNTDTVDKVLSYLMEKGLKVESGDKLGKTIIFAKNHNHAVFIEERF
NKMYPEYGGTFLRVIDNYEDKAQNLLENFCFDKGEEKDPQIAVSVDMMDTGVDAPRVLNL
VFFKEVKSFAKFWQMIGRGTRKCPDIFGKDQDKEFFLIFDICGNFEYFDEFPDGYQPSQT
QSLQSRLFDIQLDIVFHLQQQSEKTLSALALEQEYLQQLQAKVQQLDEQRFEVRKHWEMV
RKYKEASAWVQLSRSALLELYGISHLVSYTEDKDEMAKKFDLLLFNLNLALVTSDKKQKN
YIANVMNFGQLLGKKLNIPIVKQREGIIKDIQTDAFWHSVDLATVEQIRTELREVVKVLR
DEDKEKPIYTTIEDELNVNEVREMDLLENYTSLQSYKDRVEHFIRKNKHHLVIDKLYKNI
PITPSELKSLEDFLVHQKFNLSDIEKEYETKSLGLFIRKVLGLDIQAANAHFARFIQEEN
LTADQMLFVEKIIHYLNKNGILDKQMLTKPPFNDQYDNGILGVFEEKTQVMKIIGLVDEI
SKNAGVA
NT seq 3444 nt   +upstreamnt  +downstreamnt
atgaacaccaactttgcttttctaaaaaacgaatttaaagacctctatgagcatagtaaa
agtgcggagcaaaacacctttactcagcctagattttgtttaatttcttgtcgcattacg
ctagagaaagcaatgcattggctttatgataacgatgaggatttgcacttgccttaccaa
aagaatttggcggcactcatgtatgcagacgattttaaaaacatcgtaaagccctctatg
tttagagagttggtgtacattcaaaaaataggtaatagggcggcacatggcgaaaaagta
accgcaatggaagccttacaagggctgaagaatttgtttcgttttctttcttgggttagc
aaatattatagccaagaagacccagaaattcccccttttgaggaacgctacattccttac
gatacacctagggaaacggaagcccaagttatacaagatttagagaataaaagccgagca
gtcttagaaaaagaagaagctctgataagagaacgccaactgctagagcaagaaaggaaa
gacctaaggaaagagcgagaggcttatctaaaactgatgaccgagcgtaagcaggaaaga
accgaaacttaccagaatgtggaggcggtgccagaacttacttccgaaaaagagactcgc
cgtttgcttatagaccttatgctgaaagaagcaggttggggaaatttacaaaaaggtatc
aatacagaatatcctgtggaggggatgcctgctagtaccaacccatcgggtaagggtttt
gtagattatgtcttgtgggatgataacggtaaaccattggctgtgatagaagcgaaaaaa
gccagctatgatgctgccaacggaaaacaccaagccagcctttacgccgatgctcttgaa
aggaaatttgggcaacgccctctgattttctataccaatggttatgaggtttatttttgg
gacgatactttctacacgccacgcagggtgtatggtttctttaataaaaaagaattacaa
actcttatcaaacgaagaaaggagcgtagcgatattcgtcagtttcagataaatcagaat
attgcgggtcgtccgtatcagctccaagctatccaaagagtggcagaaactttggtggga
gaacacagaggcaatctaagaggtaaaagccgaaaggcactcctagtgatggctacagga
agcggaaaaacccgtacttctgccgctatggtagatatgtttaccaagtgcaattgggca
aaacggattctgtttttggcagataggaacgcattggttacacaggcaaaaaatgcattt
aaggaacatttgccacacctttcagccatagatttaacacaagataaagatgatggtacg
gctcgtgtggtattttccacttaccctactatgatgaaccgtatagaccaaataacaagc
aacggcgaaagacagtttagcatcggacatttcgatgtgattatcattgacgaagcccat
cgttcggtctatcaaaaataccaagcgatttttgattattttgatgccatacttattggg
ctcacagcaacgcctaaaaaggatattgatagaaacacctatcagctttttgagatagaa
gacgataatcccacctttgcttacgagctagacaccgctgtgaaagaaggctttttagta
ccacctaaggctttgtctgttcccgtgaaatatgtgagagaagggataaaatacaaagag
ctaaacgagaaagataaagcagaaatagaaactctttttgggctagatagcgaagagaat
gaagattttgaaattagcaaaaataagattaactcatcactttttaataccgatacagta
gataaagtattgtcctaccttatggagaaagggttaaaggtagagtctggtgataagcta
gggaaaactattattttcgctaaaaatcataatcacgctgtttttatagaggaacgattt
aataaaatgtaccctgaatacggaggaacttttctgcgtgtgattgataactacgaggat
aaagcccaaaacctattagagaatttttgctttgataaaggcgaagaaaaagatcctcaa
attgcggtttcggtggatatgatggatactggagtagatgctccaagggtattgaatttg
gtcttctttaaagaagtgaaatcctttgctaaattttggcaaatgatagggcgaggcact
agaaaatgccctgatattttcggtaaagaccaagataaagagtttttcttaatctttgac
atctgtggtaattttgaatattttgacgaattcccagatggttatcagcctagccaaact
caatctttgcaatcccgattgtttgacatacagttagatattgtgtttcacctgcaacaa
caatcagaaaaaacattatctgctttggctttagaacaagagtatttgcaacagttgcaa
gctaaggttcagcaattagacgaacagcgttttgaggtaaggaagcattgggaaatggtc
cgaaagtataaagaggcttctgcttgggttcagctatctcgttcggcactgctagagctt
tacggtataagccatctagtttcctatactgaggataaagatgaaatggctaaaaagttt
gatttattactttttaatctcaatctagcgttggttacttcggacaaaaaacaaaaaaac
tacattgccaatgtaatgaattttggacaattactaggcaaaaaacttaatatcccaatt
gtaaaacaaagagagggaattataaaagacatccagaccgatgctttttggcattcggta
gatttggctaccgtagagcagattcgtaccgaactgagggaagtggttaaagtacttaga
gatgaggataaagaaaaacctatctacaccactattgaagatgaactaaatgtgaatgag
gtaagagaaatggatttgctagaaaactacacttctctacaaagctataaagaccgtgtg
gaacattttattaggaaaaataagcaccatttggttattgataaactttacaaaaacatt
ccgattacgcctagcgaactaaagtctttggaggatttcttggtacatcaaaaattcaat
ctcagcgatatagaaaaagagtatgaaacaaagtctttagggcttttcattcgtaaagtt
ttagggttagacatacaagcagctaatgcccactttgctcggtttatacaagaagaaaac
ttaactgccgaccaaatgttgtttgtagaaaaaatcattcattaccttaacaaaaacgga
attttagataaacaaatgcttaccaaacctccgtttaacgaccaatatgataacggcatt
ttaggtgtttttgaggagaaaacacaggtaatgaagattataggtctagtagatgagatc
tccaaaaatgcaggagtagcatag

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