Riemerella anatipestifer RA-GD: RIA_1375
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Entry
RIA_1375 CDS
T02007
Name
(GenBank) Single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rar
Riemerella anatipestifer RA-GD
Pathway
rar03410
Base excision repair
rar03430
Mismatch repair
rar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RIA_1375
03430 Mismatch repair
RIA_1375
03440 Homologous recombination
RIA_1375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rar03400
]
RIA_1375
DNA repair and recombination proteins [BR:
rar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RIA_1375
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RIA_1375
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIA_1375
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
ArnB_C
Motif
Other DBs
NCBI-ProteinID:
ADZ12473
LinkDB
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Position
complement(1349889..1351631)
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AA seq
580 aa
AA seq
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MFALFSLLLWSMNQKWIYKPEPSEEVVDALISSIGYGTLESKILVLREIDNYQKAREFFK
PNLEDIHNPFLMADMQNAVERIATAIENGEKILVYGDYDVDGTTAVALMYLYLSKIVEKK
YLDFYIPDRNTEGYGISKEGIDFAKENGFSLIIALDCGIKAIDKIDYAKELGIDFIICDH
HLPGENIPKAVAVLDPKRTDCRYPFKELSGCGVGFKLCQGLNNIYRIPDEELYELTDLLA
ISIAADIVSMTGENRVLAKLGLKTLRKTRNLGIRLLIPKEKLATFDISNIVFEIAPKINA
AGRISHGKAAVELMVSDNLKHATQIVENILNLNDHRREMDMSSTTAALQQVIDTQQIQNA
TTVVYGSDWNKGVIGIVASRLTETYYKPTVVFTDGNNGEIVASARSVSDFDVHAALEECS
DLFLKFGGHPAAAGLSMEKEKFELFKEKFEKTVAKNIKEHQKEPSITIDTVVDIDDLNKD
FYNFHRKLAPFGPHNMKPILVLKNLNISGHVKQMGKDNSHIKFYIQNPNNKRNIECVGFK
LGHFADEFRNKTFDLAFTVEENHWKGNVTYYLNIKGVKFS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcccttttttcgttacttttgtggtctatgaatcaaaaatggatttacaaacca
gaacctagcgaggaagtagtagatgcccttatttcatctataggctatggcacactagag
tctaaaatactcgtcctccgcgagatagataattatcagaaagcaagagaattctttaaa
cccaaccttgaagatatacacaacccattcttaatggcagatatgcaaaacgccgtagaa
cgcattgctaccgctatagagaacggagaaaaaatattagtctatggagattatgatgta
gatggcaccactgccgtagcactaatgtacctataccttagtaaaattgtagagaagaaa
tatctagatttttacattcctgaccgaaatacagaaggctatggtatttccaaagaaggg
atagatttcgctaaagaaaacggcttttcgctaattattgctttagattgtggcataaaa
gctattgataagatagattacgctaaagagttagggatagactttattatatgcgaccac
cacttaccaggggaaaacattcctaaagcagtagccgtactagaccccaaaagaaccgat
tgccgttatcctttcaaggaactttcaggctgcggtgtagggtttaaactatgccaagga
ctcaataatatttatagaatacccgatgaggagctgtacgaacttacagatttgttagcc
atttctatcgcggcggatatcgtctctatgacgggcgaaaaccgtgtactcgcaaagtta
ggacttaaaaccttgagaaaaactagaaatctaggtataaggcttttaatcccaaaagaa
aaactagcgacttttgatatttctaatatcgtgtttgaaatcgcaccaaaaataaatgcc
gcaggaagaatttcacacggtaaagctgctgtggaactcatggtttcagataacttaaag
cacgccacacagattgtagaaaacatactaaacctcaacgaccacaggagagaaatggat
atgagttctaccaccgctgcactccagcaggtaatagacacccaacaaattcaaaacgcc
accaccgtagtttatggctccgattggaacaaaggcgttataggaattgtagcctcgagg
cttaccgaaacttattataaacctaccgttgtatttaccgatggtaataatggagagatt
gtagcttcggcaaggtcggtatcagattttgatgttcatgccgctttggaagagtgttcg
gatttatttctaaaattcggaggacaccctgctgctgctgggctttctatggaaaaagaa
aaatttgaactctttaaagaaaagtttgaaaaaacagttgcaaagaatatcaaagaacat
caaaaagaacctagtatcactattgataccgtagtagatatagacgacttaaataaggat
ttctataattttcatagaaaactagctccgtttggccctcataatatgaaacctatttta
gtccttaaaaatcttaatatcagcgggcatgtaaagcaaatgggtaaggataacagccac
attaagttttacattcaaaacccaaacaacaagcggaatatagaatgcgtaggatttaaa
ctaggtcatttcgcagacgagttccgcaataaaacctttgatttagcctttaccgtagaa
gaaaaccactggaaaggtaatgtaacttattacctcaacatcaaaggcgttaaattctct
taa
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